Difference between revisions of "WormBase-Caltech Weekly Calls"
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* Unclear of exact date | * Unclear of exact date | ||
* Probably end of March | * Probably end of March | ||
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| + | === SimpleMine issue === | ||
| + | * Redundant genes in input list are merged | ||
| + | * Should SimpleMine provide an option to keep redundancies? | ||
| + | ** Give option up front? Provide submission step to point out redundancies? Ask for choice? | ||
| + | * We can default to show row-by-row correspondence, and display the number of redundant entries | ||
Revision as of 17:37, 1 February 2018
Contents
Previous Years
GoToMeeting link: https://www.gotomeet.me/wormbase1
2018 Meetings
February 1, 2018
Automated gene descriptions - orthology
- Some genes have human orthology mentioned in automated descriptions, even though the orthology call has not been called in DIOPT
- WormBase uses EnsemblCompara and other methods (not aggregate method like DIOPT)
- Orthology synchrony is a challenge; WormBase and FlyBase may need to pay special attention to orthology calls and discrepancies
- DIOPT is purely automated, does not consider other information about orthology evidence
- We should be clear about how the orthology calls are made
Next upload
- Unclear of exact date
- Probably end of March
SimpleMine issue
- Redundant genes in input list are merged
- Should SimpleMine provide an option to keep redundancies?
- Give option up front? Provide submission step to point out redundancies? Ask for choice?
- We can default to show row-by-row correspondence, and display the number of redundant entries
