Difference between revisions of "WormBase-Caltech Weekly Calls"
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== February 1, 2018 == | == February 1, 2018 == | ||
| − | === Automated gene descriptions === | + | === Automated gene descriptions - orthology === |
* Some genes have human orthology mentioned in automated descriptions, even though the orthology call has not been called in DIOPT | * Some genes have human orthology mentioned in automated descriptions, even though the orthology call has not been called in DIOPT | ||
* WormBase uses EnsemblCompara and other methods (not aggregate method like DIOPT) | * WormBase uses EnsemblCompara and other methods (not aggregate method like DIOPT) | ||
Revision as of 17:30, 1 February 2018
Contents
Previous Years
GoToMeeting link: https://www.gotomeet.me/wormbase1
2018 Meetings
February 1, 2018
Automated gene descriptions - orthology
- Some genes have human orthology mentioned in automated descriptions, even though the orthology call has not been called in DIOPT
- WormBase uses EnsemblCompara and other methods (not aggregate method like DIOPT)
- Orthology synchrony is a challenge; WormBase and FlyBase may need to pay special attention to orthology calls and discrepancies
- DIOPT is purely automated, does not consider other information about orthology evidence
- We should be clear about how the orthology calls are made
