Difference between revisions of "WormBase-Caltech Weekly Calls"
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* Can go to "neuron" anatomy page and search expression patterns table for the term "marker"; not optimal | * Can go to "neuron" anatomy page and search expression patterns table for the term "marker"; not optimal | ||
* Can also (reverse) sort the "Expression Pattern" column of table to pull up "Marker" annotations | * Can also (reverse) sort the "Expression Pattern" column of table to pull up "Marker" annotations | ||
| − | * Create a "Markers" widget? | + | * Create a "Markers" widget? "Tissue Marker" or "Expression Marker"? Daniela will create ticket |
* Are markers still being curated? | * Are markers still being curated? | ||
Revision as of 16:36, 2 November 2017
Contents
Previous Years
2017 Meetings
November 2, 2017
Site visits
- Invited to give 25+5 minute talk at Worcester Area Worm Meeting on November 14th
- Had particular interest in micropublications
- 25-30 minutes probably insufficient to present everything that we want
- Also, fairly short notice
- Travel budget?
- Would be good to meet with individual labs and lab members to discuss WormBase
- Will probably decline this offer and wait until a longer talk next year
- Will point them to micropublication.org to find out more info
- Maybe Karen/Daniela could do a webinar during the Nov 14 slot
GO annotation for Expression cluster
- Wen asking about some GO annotation details for expression clusters
- Want to annotate a particular data set with a GO term
- Wen will discuss with Kimberly
Tazendra issue
- Had a problem Sunday-Monday
- We should consider moving curation database to a new machine/location and/or creating a backup system
- Move to the cloud? Would reduce maintenance time but will add cost
- Install on different local server?
- What are the requirements? Disk space? Computation?
Marker help desk question
- Someone looking for promoter sequences of pan-neuronal genes; neuronal marker
- Can go to "neuron" anatomy page and search expression patterns table for the term "marker"; not optimal
- Can also (reverse) sort the "Expression Pattern" column of table to pull up "Marker" annotations
- Create a "Markers" widget? "Tissue Marker" or "Expression Marker"? Daniela will create ticket
- Are markers still being curated?
