Difference between revisions of "WormBase-Caltech Weekly Calls"
From WormBaseWiki
Jump to navigationJump to search| Line 61: | Line 61: | ||
* There is a brief summary table outlining the link URLs and predicted quality | * There is a brief summary table outlining the link URLs and predicted quality | ||
* Could Cecilia check links? | * Could Cecilia check links? | ||
| + | * New interface will come out in a few months; if anyone starts now, they'll have to relearn when the new interface comes out | ||
Revision as of 18:20, 10 August 2017
Contents
Previous Years
2017 Meetings
August 3, 2017
WB grant
- Progress (maintenance stuff) can be written as of last grant cycle
- Current projects and report the steady state
CRISPR alleles
- Some authors not reporting CRISPR alleles with standard nomenclature
- Some in Paul's lab creating same knockin with same name (should be distinct). Mary Ann to update nomenclature guidelines.
- Some (e.g. Bruce Bowerman) knock-in GFP in frame and use RNAi against GFP to knockdown endogenous gene
- RNAi mapping pipeline not setup to handle this
- Could maybe use endogenous sequence near insertion site (not ideal, for off-target effects)
- Maybe best, once new ?Phenotype_experiment model is in place, to just refer to perturbed gene
Ontology Browser
- Has been less stable lately; Raymond has needed to restart machine
- Being served from Dell server (in Braun building)
August 10, 2017
WormBase grant
- Neuronal wiring with Scott Emmons? Maybe not for this round
- Transcription regulatory networks? Is a priority
Entity markup
- In silico entity linking project needs link checking
- There is a brief summary table outlining the link URLs and predicted quality
- Could Cecilia check links?
- New interface will come out in a few months; if anyone starts now, they'll have to relearn when the new interface comes out
