Difference between revisions of "WormBase-Caltech Weekly Calls"
From WormBaseWiki
Jump to navigationJump to searchm (→July 6, 2017) |
m (→July 6, 2017) |
||
| Line 46: | Line 46: | ||
* SPELL has lots of dependencies; difficult to account for them all when building SPELL | * SPELL has lots of dependencies; difficult to account for them all when building SPELL | ||
* Would be good if we could setup a new (larger) virtual machine to run SPELL; how much time/resources do we want to spend on it? | * Would be good if we could setup a new (larger) virtual machine to run SPELL; how much time/resources do we want to spend on it? | ||
| + | |||
| + | === Micropublications === | ||
| + | * Poster at Zebrafish meeting pointing to micropublications | ||
| + | * Microarray micropublications? Unpublished results | ||
| + | * Can make links to GEO submissions | ||
| + | * Daniela and Karen can draw up a mock publication to look at as a template | ||
Revision as of 17:01, 6 July 2017
Contents
Previous Years
2017 Meetings
July 6, 2017
Noctua
- Use for all literature curation in future?
- We would need to see how it could be used for all data types
- We would also want a full-time developer working on Noctua; maybe bring Juancarlos into the project
SPELL
- SPELL related data - how to deal with?
- Data: recalculated, mapping, results dependent on SPELL
- Analysis (clustering tool): clunky, freezes w/limited resources
- Wen will work with Juancarlos to generate a SimpleMine-like tool for downloading data sets
- Wen has to remove log files to make space on machine
- ~360 data sets
- Current virtual machine has 10G memory; is becoming limiting
- SPELL has lots of dependencies; difficult to account for them all when building SPELL
- Would be good if we could setup a new (larger) virtual machine to run SPELL; how much time/resources do we want to spend on it?
Micropublications
- Poster at Zebrafish meeting pointing to micropublications
- Microarray micropublications? Unpublished results
- Can make links to GEO submissions
- Daniela and Karen can draw up a mock publication to look at as a template
