Difference between revisions of "WormBase-Caltech Weekly Calls"
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* WS258 adding gene class | * WS258 adding gene class | ||
* WS259 adding more info (almost all meta data) on variations, laboratory and strains, RNAi phenotypes (hopefully) | * WS259 adding more info (almost all meta data) on variations, laboratory and strains, RNAi phenotypes (hopefully) | ||
+ | * Expression data in WormMine is problematic | ||
+ | * Many genes being annotated to the same ~6 tissues or so | ||
+ | * Resulting in erroneous data for some genes | ||
+ | * Chris will send GitHub ticket to Todd | ||
+ | * Todd will discuss with Paulo today | ||
+ | |||
+ | === Gene Ontology === | ||
+ | * Some very complex terms becoming immediate children of root terms (e.g. "biological process") | ||
+ | * May be result of attempt to create logical definitions/equivalence axioms | ||
+ | * Raymond will discuss with Kimberly |
Revision as of 16:23, 6 April 2017
Contents
Previous Years
2017 Meetings
April 6, 2017
AGR time spent
- Paul S asking about %time spent on AGR project
- Time spent on working groups, conference calls, AGR development
- Send estimates to Paul
SimpleMine
- Two tables added to SimpleMine for human orthology
- Now SimpleMine output has many columns (30+)
- We may want to give users the option to specify which output they want
- Users could specify groups of data (with checkboxes): gene IDs/names, phenotypes, orthology, etc.
- All checkboxes can be checked by default
Enrichment tools
- Raymond working on display for paper
Gene Ontology SObA graph
- Raymond, Juancarlos working on
- Working on paper
WormMine updates
- WS258 adding gene class
- WS259 adding more info (almost all meta data) on variations, laboratory and strains, RNAi phenotypes (hopefully)
- Expression data in WormMine is problematic
- Many genes being annotated to the same ~6 tissues or so
- Resulting in erroneous data for some genes
- Chris will send GitHub ticket to Todd
- Todd will discuss with Paulo today
Gene Ontology
- Some very complex terms becoming immediate children of root terms (e.g. "biological process")
- May be result of attempt to create logical definitions/equivalence axioms
- Raymond will discuss with Kimberly