Difference between revisions of "WormBase-Caltech Weekly Calls"
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* Karen will need to become part time at WormBase (needs to be more than half time on SBIR) | * Karen will need to become part time at WormBase (needs to be more than half time on SBIR) | ||
* Paul put in a request for posting another curator position | * Paul put in a request for posting another curator position | ||
+ | ** If anyone has ideas about a potential (part-time or full-time) curator, let Paul know | ||
* Will need to consider re-allocation of curation responsibilities | * Will need to consider re-allocation of curation responsibilities | ||
* Molecule curation in maintenance mode, may require updating of mapping terms with our internal IDs | * Molecule curation in maintenance mode, may require updating of mapping terms with our internal IDs |
Revision as of 17:31, 2 March 2017
Contents
Previous Years
2017 Meetings
March 1, 2017
Expression Cluster SVM
- Started curating expression clusters in 2007
- Had been using text pattern match to identify expression cluster papers
- Now with more papers for positive and negative training set, shifting to SVM identification
- 540 positive papers, 900 negative papers for training
- Wen received first batch, roughly ~70% precision, possibly ~80-90% recall
- Wen reviewed papers from WormEXP (http://wormexp.zoologie.uni-kiel.de/wormexp/)
Karen's SBIR grant
- Looks like it will get funded
- Karen will need to become part time at WormBase (needs to be more than half time on SBIR)
- Paul put in a request for posting another curator position
- If anyone has ideas about a potential (part-time or full-time) curator, let Paul know
- Will need to consider re-allocation of curation responsibilities
- Molecule curation in maintenance mode, may require updating of mapping terms with our internal IDs
- Ranjana: want to incorporate molecules in disease curation for WB/AGR, can offer to take over maintenance
- Do other AGR members curate molecules? In some cases yes; don't capture metabolites
- Transgene curation could be distributed