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| | [[WormBase-Caltech_Weekly_Calls_March_2013|March]] | | [[WormBase-Caltech_Weekly_Calls_March_2013|March]] |
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| − | | + | [[WormBase-Caltech_Weekly_Calls_April_2013|April]] |
| − | | |
| − | = April 4, 2013 =
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| − | | |
| − | IWM 2013
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| − | *Abstracts for posters (6 posters total)
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| − | *WormBase booth with desks and poster space
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| − | **How is the space going to be configured?
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| − | **Will there be enough space?
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| − | *Projector? Need space to project
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| − | *Standing tables instead of desks
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| − | | |
| − | | |
| − | IWM Promotional ideas
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| − | *Recycle ideas/items
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| − | *See what we have in stock
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| − | *Temporary tattoos?
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| − | *SPlit cost with GSA?
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| − | *Mugs?
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| − | *Triangular worm pick/pencil grip
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| − | | |
| − | | |
| − | Expression pattern, personal communication
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| − | *Can we include expression patterns from WormBook?
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| − | **Original report from paper by Chris Li et al
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| − | **Conflicting neuropeptide expression pattern from Oliver Hobert & Cori Bargmann in WormBook
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| − | *How do we handle? Can we put description in WormBase?
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| − | *Normally we don't curate from reviews
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| − | *Best to contact Chris Li, check with her about expression pattern
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| − | *Amend/Edit expression pattern as appropriate
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| − | | |
| − | | |
| − | Function, Human Disease poster
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| − | *"Gene Function & Dysfunction"
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| − | *Concise description
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| − | *GO terms
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| − | *Phenotypes (RNAi- and variation-based)
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| − | *Anatomy: Site of Action and Anatomy Function
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| − | | |
| − | | |
| − | Variation list
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| − | *Handling large number of variations in OA
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| − | *Generating list of variations likely to be attributed with phenotypes
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| − | *Table maker vs Scripts?
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| − | *Variation data from GeneAce, how frequently updated? Real time?
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| − | *Get new variations from Variation Name Server, not GeneAce
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| − | *Is it worth trying to get daily updates?
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| − | *Name Server: get Variation & Gene info from
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| − | *Propose adding the Variation-Gene connections to Name Server
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| − | *Can we (Caltech) mirror/copy GeneAce locally? Fire wall issues
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| − | *Store MySQL databases on the cloud? Bypass fire walls? Maybe for long term plan
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| − | | |
| − | | |
| − | = April 11, 2013 =
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| − | | |
| − | IWM abstracts
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| − | *Deadline tomorrow
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| − | *Topics to place posters under? Database, biological topics?
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| − | *Registration
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| − | **What's the status?
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| − | **Karen made a Google doc, but asked us to hold off on filling out info until she talks to Mary Alvarez
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| − | | |
| − | | |
| − | Upload coming up
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| − | *Wen preparing mid-build
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| − | *Wen pushing Citace Minus fixes
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| − | | |
| − | | |
| − | Dead gene handling
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| − | *Historical_gene tag has been added to appropriate models
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| − | *Chris will work with Juancarlos to sort out OA dumping scripts for Gene_regulation and Interaction OAs
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| − | *Chris will work with web team to sort out web display issues
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| − | *Chris will write up a template describing all the changes that need to be made
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| − | | |
| − | | |
| − | Computers
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| − | *Raymond setup FTP directory for Wen
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| − | *If anyone wants an FTP folder, we can do that
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| − | *Would exist on caltech.wormbase.org on Canopus
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| − | *Spica: WS237 was having problems
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| − | **Couple of issues with Spica: older hardware, using older operating system (Red Hat)
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| − | **ACEDB software problem
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| − | ***Possible but difficult to upgrade ACEDB software
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| − | ***Not yet resolved issue with XACE or AcePerl, but AceDiff is resolved
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| − | **WS237 had a data problem
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| − | ***Raymond re-installed WS database
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| − | *Mac issues: key mapping (e.g. Alt+F4)
| |
| − | **Solution? Use virtual machine?
| |
| − | **VMWare has Fusion; apparently works fairly well
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| − | **Mac users could install, for example, Ubuntu with Fusion and run ACEDB on Ubuntu
| |
| − | **Raymond is confident in providing support for this approach
| |
| − | *Running ACEDB remotely is possible, but probably not a long-term, robust, or sustainable solution
| |
| − | *Note: ACEDB needs to be built from source; binary images don't work
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| − | | |
| − | | |
| − | | |
| − | = April 25, 2013 =
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| − | | |
| − | IWM Meeting
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| − | *Posters and talk(s)
| |
| − | *We may not be able to get booth space to accommodate all (6) posters AND a projection screen
| |
| − | *Todd and Chris will discuss with Anne Marie Mahoney
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| − | | |
| − | | |
| − | Upload Schedule
| |
| − | *Need better upload/release schedule
| |
| − | *Add more events: Citace testing?
| |
| − | *Strict vs flexible timeline?
| |
| − | *Proposed timeline on [http://timeglider.com/ Time Glider] app: [http://timeglider.com/timeline/cacc0f6f4491a510 Karen's proposal]
| |
| − | | |
| − | | |
| − | WormBase You Tube Channel
| |
| − | *Abby and Todd looking into this now
| |
| − | *Macs running OSX Lion or higher have a good screen capture functionality with Quicktime (for free)
| |
| − | *We can prepare videos with content for the upcoming workshops
| |
| − | | |
| − | | |
| − | Capturing curation pipeline documentation on [https://github.com/WormBase/wormbase-curation GitHub WormBase curation repository]
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| − | *Store scripts for OA dumping scripts, for example
| |
| − | *Can keep links to relevant Wiki pages
| |
| − | *Curators should be the ultimate manager of scripts, working with Juancarlos to make any required changes
| |
| − | *Karen will work out a procedure for "Gitifying" her curation pipelines and will share what worked with other curators
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