Difference between revisions of "WormBase-Caltech Weekly Calls"
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Expression pattern, personal communication | Expression pattern, personal communication | ||
| − | *Can we include expression patterns from WormBook | + | *Can we include expression patterns from WormBook? |
| − | *Can we put description in WormBase? | + | **Original report from paper by Chris Li et al |
| − | + | **Conflicting neuropeptide expression pattern from Oliver Hobert & Cori Bargmann in WormBook | |
| + | *How do we handle? Can we put description in WormBase? | ||
*Normally we don't curate from reviews | *Normally we don't curate from reviews | ||
| − | *Best to contact Chris | + | *Best to contact Chris Li, check with her about expression pattern |
*Amend/Edit expression pattern as appropriate | *Amend/Edit expression pattern as appropriate | ||
Function, Human Disease poster | Function, Human Disease poster | ||
| + | *"Gene Function & Dysfunction" | ||
*Concise description | *Concise description | ||
*GO terms | *GO terms | ||
*Phenotypes (RNAi- and variation-based) | *Phenotypes (RNAi- and variation-based) | ||
| − | *Anatomy: | + | *Anatomy: Site of Action and Anatomy Function |
Revision as of 17:41, 4 April 2013
2013 Meetings
April 4, 2013
IWM 2013
- Abstracts for posters (6 posters total)
- WormBase booth with desks and poster space
- How is the space going to be configured?
- Will there be enough space?
- Projector? Need space to project
- Standing tables instead of desks
IWM Promotional ideas
- Recycle ideas/items
- See what we have in stock
- Temporary tattoos?
- SPlit cost with GSA?
- Mugs?
- Triangular worm pick/pencil grip
Expression pattern, personal communication
- Can we include expression patterns from WormBook?
- Original report from paper by Chris Li et al
- Conflicting neuropeptide expression pattern from Oliver Hobert & Cori Bargmann in WormBook
- How do we handle? Can we put description in WormBase?
- Normally we don't curate from reviews
- Best to contact Chris Li, check with her about expression pattern
- Amend/Edit expression pattern as appropriate
Function, Human Disease poster
- "Gene Function & Dysfunction"
- Concise description
- GO terms
- Phenotypes (RNAi- and variation-based)
- Anatomy: Site of Action and Anatomy Function
Variation list
- Handling large number of variations in OA
- Generating list of variations likely to be attributed with phenotypes
- Table maker vs Scripts?
- Variation data from GeneAce, how frequently updated? Real time?
- Get new variations from Variation Name Server, not GeneAce
- Is it worth trying to get daily updates?
- Name Server: get Variation & Gene info from
- Propose adding the Variation-Gene connections to Name Server
- Can we (Caltech) mirror/copy GeneAce locally? Fire wall issues
- Store MySQL databases on the cloud? Bypass fire walls? Maybe for long term plan
