Difference between revisions of "WormBase-Caltech Weekly Calls"
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New ?Interaction model | New ?Interaction model | ||
*Update old objects and speak to web team about new model before officially incorporating new ?Interaction model | *Update old objects and speak to web team about new model before officially incorporating new ?Interaction model | ||
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| + | |||
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| + | == February 9, 2012 == | ||
| + | |||
| + | Interaction model | ||
| + | *Added some XREFs (in Interactor tag) and Chromatin_IP to Detection method | ||
| + | *Co-Immunoprecipitation would be captured under Detection method "Affinity Capture Western" | ||
| + | *Worked out changes needed for old *.ACE files to fit new model; will give to Juancarlos to script | ||
| + | |||
| + | |||
| + | Transgene | ||
| + | *Daniela, Juancarlos, and Karen imported Extrachromosomal array transgenes into the Transgene OA | ||
| + | *Extrachromosomal array transgenes for which authors have not provided a name will be named Expr####_Ex | ||
| + | *Maybe we will name according to paper e.g. "WBPaper########_Ex####" | ||
| + | *Daniela and Karen will discuss cost-benefit of objectifying Ex transgenes | ||
| + | *Rather than determine transgene sequence (or partial sequence), curators will (as they have been) add free-text describing the sequence | ||
| + | **This includes: primer sets, restriction digest sites, etc. | ||
| + | **Continue to place this info in the Reporter_gene tag | ||
| + | **Use controlled vocabulary? | ||
| + | **Maybe add a free-text field for | ||
Revision as of 19:36, 9 February 2012
2012 Meetings
February 2, 2012
EPIC data into WormBase
- Daniela spoke to John Murray
- Need to modify model and display for data
- 3D movies as ?Movie objects
Endrov
- Tom Burglin and student Johan Henriksson developed Endrov.net (http://www.endrov.net)
- May be able to incorporate Endrov visualizations of Blender model and cell lineage into WormBase website?
- Need to talk to Todd and Web team
Elsevier legal issues
- Science-direct website links to-and-from WormBase website
- Daniela still working with contacts at MGI (Mouse Genomics Institute/Jackson Labs) & Elsevier
- MGI already has established links with Elsevier
New ?Interaction model
- Update old objects and speak to web team about new model before officially incorporating new ?Interaction model
February 9, 2012
Interaction model
- Added some XREFs (in Interactor tag) and Chromatin_IP to Detection method
- Co-Immunoprecipitation would be captured under Detection method "Affinity Capture Western"
- Worked out changes needed for old *.ACE files to fit new model; will give to Juancarlos to script
Transgene
- Daniela, Juancarlos, and Karen imported Extrachromosomal array transgenes into the Transgene OA
- Extrachromosomal array transgenes for which authors have not provided a name will be named Expr####_Ex
- Maybe we will name according to paper e.g. "WBPaper########_Ex####"
- Daniela and Karen will discuss cost-benefit of objectifying Ex transgenes
- Rather than determine transgene sequence (or partial sequence), curators will (as they have been) add free-text describing the sequence
- This includes: primer sets, restriction digest sites, etc.
- Continue to place this info in the Reporter_gene tag
- Use controlled vocabulary?
- Maybe add a free-text field for
