Difference between revisions of "WormBase-Caltech Weekly Calls"

BioGRID, Gene Orienteer, Interolog database, etc.
Gene Orienteer
- May only want interactions above a threshold
Interolog database
- Get gene pages linked to their database
- Display data on gene pages, but keep display distinct?
FlyBase links out to BioGRID, Interolog
modEncode Transcription Regulatory Network display/diagrams?

New site release with WS230?

Textpresso Interaction Sentences

Now have sentences associated with interactions
Need to discuss what sentences should be kept as adequate evidence of interaction and placed in remarks
See if Textpresso can pull out paragraphs (or +/- 4 sentences?) for each sentence to see context
Can we devise some automation to handle interaction updates?

@@ Line 31: / Line 31: @@
 ==January 5, 2012==
+Interactions patch
+*One large scale paper omitted from upload
+*Patch sent in; all OK
+Integration of 3rd party data
+*BioGRID, Gene Orienteer, Interolog database, etc.
+*Gene Orienteer
+**May only want interactions above a threshold
+*Interolog database
+**Get gene pages linked to their database
+**Display data on gene pages, but keep display distinct?
+*FlyBase links out to BioGRID, Interolog
+*modEncode Transcription Regulatory Network display/diagrams?
+New site release with WS230?
+*About 2 months
+Textpresso Interaction Sentences
+*Now have sentences associated with interactions
+*Need to discuss what sentences should be kept as adequate evidence of interaction and placed in remarks
+*See if Textpresso can pull out paragraphs (or +/- 4 sentences?) for each sentence to see context
+*Can we devise some automation to handle interaction updates?

Revision as of 18:02, 5 January 2012