Difference between revisions of "WormBase-Caltech Weekly Calls"

Revision as of 19:13, 3 November 2011

Gene ID mapping problems (as discussed in site-wide call)

Does CIT need to worry about consistency of gene IDs over database builds?
Hyper-linking entities in papers could be an issue
Acquire an ID for every gene for every new genome?
When mark a paper, separate into two different types of genes :stable vs unstable
- Stable genes map to stable ID
- Unstable genes map with a version number
WormBase communicate/work with DCC personnel for data wrangling during post-DCC era?

Updating Predicted Gene Interactions

Wei wei asking about how to update with WormBase
WormBase predicted interaction objects can be updated simply via link to Gene Orienteer
If we want a live interaction browser, we would need to pull the data into the build process
Do we want a single object per pair of genes? One object per instance of evidence (per paper)?

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