Difference between revisions of "WormBase-Caltech Weekly Calls"
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*Probably cannot fix | *Probably cannot fix | ||
*Need to buy new one | *Need to buy new one | ||
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| + | == August 11, 2011 == | ||
| + | |||
| + | Physical Interaction model | ||
| + | *Separating out from general "Interaction" model | ||
| + | *Combining the Yeast-Hybrid classes with the other Physical interactions | ||
| + | *Setting up a merged model that captures all information from previous Y2H, Y1H, and other physical interaction objects | ||
| + | |||
| + | |||
| + | Genetic Interaction Ontology | ||
| + | *Working with Rose, Andrew and Julie from BioGRID | ||
| + | *Established a good working (first draft) ontology for genetic interactions | ||
| + | *Will make adjustments to current document based on neutrality functions | ||
| + | |||
| + | |||
| + | FlyBase GSA Markup | ||
| + | *Working well with FlyBase | ||
| + | *Incorporating new corrections to scripts and entity lists | ||
Revision as of 18:56, 11 August 2011
2011 Meetings
August 4, 2011
Leak in office
- Emergency showers don't necessarily have drains
- We need to make sure that things in offices are prepared for potential water leaks
- Production server still running
- Mangolassi down for the time being; will be back up when dry
- Should call physical plant 24-hour emergency line (ext. 4717)
- Feel free to check offices/labs above ours to assess risk of leak
Testing concise description OA on sandbox
- Community annotation form needs to be very simple (e.g. gene name and empty box only)
Transgenomics pictures
- Daniela spoke with Mihail about getting pictures from their database
- We should know exactly what the clone is (sequence)
- What are they using for anatomy annotation? they use standard Anatomy Ontology (Daniela double checked with Mihail)
- Linking to Yuji Kohara's database (NEXTDB)?
Gene file from Hinxton to populate Gene Tables
- Kimberly working with Mary Ann Tuli and Michael Paulini to make sure each gene names are cleaned up
Raymond
- Trying to install Amigo (for Ontology browsing)
- Working on SPELL
SVM
- Karen using author first pass list for priority
- 2 out of 3 papers have not been flagged for phenotype; Why?
- Michael setup a way to tag papers on Textpresso Dev if they've been processed by SVM
- How do we make sure all papers go through SVM pipeline?
Replacing power supply on conference phone
- Probably cannot fix
- Need to buy new one
August 11, 2011
Physical Interaction model
- Separating out from general "Interaction" model
- Combining the Yeast-Hybrid classes with the other Physical interactions
- Setting up a merged model that captures all information from previous Y2H, Y1H, and other physical interaction objects
Genetic Interaction Ontology
- Working with Rose, Andrew and Julie from BioGRID
- Established a good working (first draft) ontology for genetic interactions
- Will make adjustments to current document based on neutrality functions
FlyBase GSA Markup
- Working well with FlyBase
- Incorporating new corrections to scripts and entity lists
