Difference between revisions of "WormBase-Caltech Weekly Calls"
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Practice Talks before International Worm Meeting | Practice Talks before International Worm Meeting | ||
*on Monday before meeting | *on Monday before meeting | ||
| + | |||
| + | |||
| + | |||
| + | == May 12, 2011 == | ||
| + | |||
| + | |||
| + | Example of Bandana for International Worm Meeting | ||
| + | *Looks good! | ||
| + | |||
| + | |||
| + | GO Consortium meeting next week | ||
| + | *Paul, Michael, Ranjana, and Kimberly going | ||
| + | *Discussion about tools (Juancarlos?) | ||
| + | *Section in meeting agenda to discuss curation | ||
| + | **Textpresso-based curation | ||
| + | **Ontology Annotator | ||
| + | **Demo by Kimberly or Ranjana? | ||
| + | **Relatively trivial to setup new OA for a new site (Juancarlos) | ||
| + | **Discuss what's been proposed in the grant | ||
| + | **What does the consortium want? Brainstorming/Fantasizing | ||
| + | **People are likely partial to their own tools | ||
| + | **Make use of the best parts of everyone's tools | ||
| + | **Are others using flat/text files or web-based/java-based tools? Mostly web-based | ||
| + | **Phenote? Funding? Bio-Portal e-mail? | ||
| + | **PAINT tool (Phylogenetic Annotation and INference Tool) (http://wiki.geneontology.org/index.php/PAINT) | ||
| + | |||
| + | |||
| + | Progress Report | ||
| + | *Paul has received some reports, but not all, yet | ||
| + | |||
| + | |||
| + | Picture curation | ||
| + | *Started receiving permission from Elsevier!! | ||
| + | *Blanket-permission for 11 journals | ||
| + | *Publicly display list of cooperating journals online | ||
| + | |||
| + | |||
| + | Talks at the Int Worm Meeting | ||
| + | *Paul S listed for a Plenary talk during Workshop | ||
| + | *Two Wormbase Plenary talks | ||
| + | |||
| + | |||
| + | Snehal | ||
| + | *Concise descriptions | ||
| + | *Kimberly helping | ||
| + | *Will get into phenotypes soon | ||
| + | |||
| + | |||
| + | Juancarlos waiting to hear back from some people about OA | ||
| + | *People need more time to test | ||
| + | *Karen has encountered some issues; needs to reproduce | ||
| + | *Ranjana - loads slowly? | ||
Revision as of 18:31, 12 May 2011
2011 Meetings
May 5, 2011
Citace upload
- Using current citace release (WS226) for Progress Report
Pictures
- Daniela did not actually curate ~7000 pictures this month ;)
- Script to fetch pictures automatically
Snehal starts next week
- working on phenotype curation
- 90 genes >= 10 publications
- Of these 90, 54 with no annotated phenotype
- 20,000 genes with RNAi data
- Concise Descriptions? May be appropriate
- Prioritize by genes that currently have no description but have new papers
- Picture curation?
- Learning an ontology may be difficult, but she can stick to familiar material
Aldrin
- Karen, Raymond, Chris will talk to Todd
- Lineage browser for ontologies?
- Cell lineage browser? Capture multi-parentage issues
Ranjana - Preplanning WormBase side meetings at IWM?
Periodically sending someone to different sites
- E.g. Someone from Caltech goes to Hinxton, etc.
Practice Talks before International Worm Meeting
- on Monday before meeting
May 12, 2011
Example of Bandana for International Worm Meeting
- Looks good!
GO Consortium meeting next week
- Paul, Michael, Ranjana, and Kimberly going
- Discussion about tools (Juancarlos?)
- Section in meeting agenda to discuss curation
- Textpresso-based curation
- Ontology Annotator
- Demo by Kimberly or Ranjana?
- Relatively trivial to setup new OA for a new site (Juancarlos)
- Discuss what's been proposed in the grant
- What does the consortium want? Brainstorming/Fantasizing
- People are likely partial to their own tools
- Make use of the best parts of everyone's tools
- Are others using flat/text files or web-based/java-based tools? Mostly web-based
- Phenote? Funding? Bio-Portal e-mail?
- PAINT tool (Phylogenetic Annotation and INference Tool) (http://wiki.geneontology.org/index.php/PAINT)
Progress Report
- Paul has received some reports, but not all, yet
Picture curation
- Started receiving permission from Elsevier!!
- Blanket-permission for 11 journals
- Publicly display list of cooperating journals online
Talks at the Int Worm Meeting
- Paul S listed for a Plenary talk during Workshop
- Two Wormbase Plenary talks
Snehal
- Concise descriptions
- Kimberly helping
- Will get into phenotypes soon
Juancarlos waiting to hear back from some people about OA
- People need more time to test
- Karen has encountered some issues; needs to reproduce
- Ranjana - loads slowly?
