Difference between revisions of "WebDev 2009.06.16-Agenda and Minutes"
From WormBaseWiki
Jump to navigationJump to search(3 intermediate revisions by the same user not shown) | |||
Line 8: | Line 8: | ||
* [[Migrating_frozen_releases_to_OICR]] | * [[Migrating_frozen_releases_to_OICR]] | ||
− | + | In migrating, reconciled four long-standing back burner issues: | |
− | |||
* localized libraries | * localized libraries | ||
Line 16: | Line 15: | ||
* GBrowse 2 | * GBrowse 2 | ||
− | LS: | + | GBrowse2: |
+ | * LS: Check to make sure using preforked and not multi-threaded Apache. | ||
+ | * TH: finishing up migration of configuration files | ||
+ | * LS: Include feature from common elements | ||
+ | ** #include path/* // for example | ||
Aggregator issues | Aggregator issues | ||
− | + | * Custom wormbase gene aggregator not working | |
+ | * LS: Bio::DB::SeqFeature? | ||
+ | * TH: Nope, Bio::DB::GFF | ||
+ | * Aggregator has to be associated with the database conf, not GBrowse.conf | ||
− | |||
− | |||
tmpimages | tmpimages | ||
− | + | * TH: available in GB1, used primarily for resolving backend machines generating gbrowse_img pics | |
− | + | * LS: now handled by apache config stanza | |
− | * mapping from temporary URL space to physical space; adjust to do spacing | + | ** mapping from temporary URL space to physical space; adjust to do spacing |
== 3. modENCODE Update (Marc, Peter, Zheng; 30 minutes) == | == 3. modENCODE Update (Marc, Peter, Zheng; 30 minutes) == | ||
+ | |||
+ | Peter: | ||
+ | * Duplicated tracks - regular expression not capturing pattern appropriately | ||
+ | * Nicole working with Waterston on additional data sets | ||
+ | |||
+ | |||
+ | Marc: | ||
+ | |||
+ | Zheng: | ||
+ | WormMart and modENCODE BioMart | ||
+ | |||
+ | BioMart will have central port that will point to development server | ||
+ | |||
+ | * TH: Where will the database live? Do we need to host? | ||
+ | * '''ZZ: Will discuss with Arek''' | ||
== 4. Open Table == | == 4. Open Table == | ||
+ | |||
+ | NO CONFERENCE CALL NEXT WEEK DUE TO THE INTERNATIONAL WORM MEETING |
Latest revision as of 09:38, 1 July 2009
Contents
1. Administration (Todd, 5 minutes)
2. Describe OICR migration progress (Todd, 10 minutes)
See:
In migrating, reconciled four long-standing back burner issues:
- localized libraries
- mod_perl2
- apache2
- GBrowse 2
GBrowse2:
- LS: Check to make sure using preforked and not multi-threaded Apache.
- TH: finishing up migration of configuration files
- LS: Include feature from common elements
- #include path/* // for example
Aggregator issues
- Custom wormbase gene aggregator not working
- LS: Bio::DB::SeqFeature?
- TH: Nope, Bio::DB::GFF
- Aggregator has to be associated with the database conf, not GBrowse.conf
tmpimages
- TH: available in GB1, used primarily for resolving backend machines generating gbrowse_img pics
- LS: now handled by apache config stanza
** mapping from temporary URL space to physical space; adjust to do spacing
3. modENCODE Update (Marc, Peter, Zheng; 30 minutes)
Peter:
- Duplicated tracks - regular expression not capturing pattern appropriately
- Nicole working with Waterston on additional data sets
Marc:
Zheng: WormMart and modENCODE BioMart
BioMart will have central port that will point to development server
- TH: Where will the database live? Do we need to host?
- ZZ: Will discuss with Arek
4. Open Table
NO CONFERENCE CALL NEXT WEEK DUE TO THE INTERNATIONAL WORM MEETING