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• WBConfCall 2018.12.06-Agenda and Minutes
  * User wanting to download genome assembly as well as RNA-Seq and miRNA-Seq data sets == 2019 International ''C. elegans'' Meeting ==
  4 KB (575 words) - 18:18, 6 December 2018
• BASIC PROTOCOL 3: EXAMINING A GENE IN C. ELEGANS
  ...oarray probes; SAGE oligonucleotides; and references from the primary ''C. elegans'' research literature. All of these are given with hypertext links allowing Most of this information is given as tabulated text. However, for cloned genes, there will also be a schematic diagram of the gene's physical organization
  5 KB (855 words) - 19:57, 11 August 2010
• WBConfCall 2012.07.019-Agenda and Minutes
  *Cursory gene pages for Tier II and III genes *Long non-coding RNA (lncRNA) submissions
  4 KB (617 words) - 17:01, 19 July 2012
• WBConfCall 2012.10.03-Agenda and Minutes
  *Recent e-mail regarding download of brief identification info from Batch Genes (in legacy) *'Nearby Genes' search tool in legacy
  2 KB (303 words) - 09:13, 5 October 2012
• Curated data types
  ...C. elegans'', ''C. elegans'' other than Bristol, nematodes other than ''C. elegans'', or non-nematode species. | Genes studied or cloned||''C. elegans'' or other Caenorhabditis studied or newly identified in the paper.
  5 KB (816 words) - 20:11, 7 September 2011
• WS209
  ...ormrna209.tar.gz - latest WormRNA release containing non-coding RNA's in the genome vii) confirmed_genes.WS209.gz - DNA sequences of all genes confirmed by EST &/or cDNA
  6 KB (687 words) - 16:50, 21 December 2011
• WS208
  ...ormrna208.tar.gz - latest WormRNA release containing non-coding RNA's in the genome vii) confirmed_genes.WS208.gz - DNA sequences of all genes confirmed by EST &/or cDNA
  5 KB (581 words) - 16:50, 21 December 2011
• WS212
  ...ormrna212.tar.gz - latest WormRNA release containing non-coding RNA's in the genome vii) confirmed_genes.WS212.gz - DNA sequences of all genes confirmed by EST &/or cDNA
  5 KB (582 words) - 11:16, 21 December 2011
• WBConfCall 2018.06.21-Agenda and Minutes
  ...ions are not. Currently, the only annotation extension relation in the C. elegans annotation file that solely uses RO relations is Molecule_relation. In the * Finding all 7S RNA (SRP) genes in C. elegans: https://github.com/WormBase/website/issues/6475
  4 KB (691 words) - 17:16, 21 June 2018
• WS204
  ...ormrna204.tar.gz - latest WormRNA release containing non-coding RNA's in the genome vii) confirmed_genes.WS204.gz - DNA sequences of all genes confirmed by EST &/or cDNA
  6 KB (648 words) - 16:16, 21 December 2011
• WS203
  ...ormrna203.tar.gz - latest WormRNA release containing non-coding RNA's in the genome vii) confirmed_genes.WS203.gz - DNA sequences of all genes confirmed by EST &/or cDNA
  6 KB (662 words) - 16:50, 21 December 2011
• WS213
  ...ormrna213.tar.gz - latest WormRNA release containing non-coding RNA's in the genome vii) confirmed_genes.WS213.gz - DNA sequences of all genes confirmed by EST &/or cDNA
  6 KB (764 words) - 16:45, 21 December 2011
• WS187
  ...ormrna187.tar.gz - latest WormRNA release containing non-coding RNA's in the genome vii) confirmed_genes.WS187.gz - DNA sequences of all genes confirmed by EST &/or cDNA
  6 KB (647 words) - 16:43, 21 December 2011
• WS199
  ...'s in the genome vii) confirmed_genes.WS199.gz - DNA sequences of all genes confirmed by EST &/or cDNA ...ted_map_positions.WS199.gz - Interpolated map positions for each coding/RNA gene
  6 KB (661 words) - 16:51, 21 December 2011
• WBConfCall 2020.04.16-Agenda and Minutes
  1. Looking for AVB-specific promoter of C. Elegans - single cell RNA-seq data available for the cell-specific gene or reporter expression patter
  2 KB (303 words) - 18:23, 16 April 2020
• WS207
  ...ormrna207.tar.gz - latest WormRNA release containing non-coding RNA's in the genome vii) confirmed_genes.WS207.gz - DNA sequences of all genes confirmed by EST &/or cDNA
  6 KB (675 words) - 16:42, 21 December 2011
• Caenorhabditis angaria
  ...ar Elegans group containing C. elegans, C. briggsae, C. remanei, and other elegans look-alikes. Meanwhile, the genome of C. angaria (as determined by next-gen RNA-seq scaffolding) has been published in the December 2010 issue of Genome Re
  3 KB (437 words) - 16:02, 15 December 2011
• WS216
  ...ormrna216.tar.gz - latest WormRNA release containing non-coding RNA's in the genome vii) confirmed_genes.WS216.gz - DNA sequences of all genes confirmed by EST &/or cDNA
  7 KB (818 words) - 11:10, 21 December 2011
• WS188
  ...ormrna188.tar.gz - latest WormRNA release containing non-coding RNA's in the genome vii) confirmed_genes.WS188.gz - DNA sequences of all genes confirmed by EST &/or cDNA
  6 KB (769 words) - 11:01, 21 December 2011
• WS107
  ...ormrna107.tar.gz - latest WormRNA release containing non-coding RNA's in the genome vii) confirmed_genes.WS107.gz - DNA sequences of all genes confirmed by EST &/or cDNA
  6 KB (659 words) - 11:17, 21 December 2011
• WS191
  ...ormrna191.tar.gz - latest WormRNA release containing non-coding RNA's in the genome vii) confirmed_genes.WS191.gz - DNA sequences of all genes confirmed by EST &/or cDNA
  6 KB (756 words) - 16:53, 21 December 2011
• WS205
  ...ormrna205.tar.gz - latest WormRNA release containing non-coding RNA's in the genome vii) confirmed_genes.WS205.gz - DNA sequences of all genes confirmed by EST &/or cDNA
  6 KB (711 words) - 16:31, 21 December 2011
• WS196
  ...ormrna196.tar.gz - latest WormRNA release containing non-coding RNA's in the genome vii) confirmed_genes.WS196.gz - DNA sequences of all genes confirmed by EST &/or cDNA
  6 KB (748 words) - 16:41, 21 December 2011
• WS210
  ...ormrna210.tar.gz - latest WormRNA release containing non-coding RNA's in the genome vii) confirmed_genes.WS210.gz - DNA sequences of all genes confirmed by EST &/or cDNA
  6 KB (721 words) - 16:46, 21 December 2011
• WS198
  ...ormrna198.tar.gz - latest WormRNA release containing non-coding RNA's in the genome vii) confirmed_genes.WS198.gz - DNA sequences of all genes confirmed by EST &/or cDNA
  6 KB (692 words) - 16:51, 21 December 2011
• WS197
  ...ormrna197.tar.gz - latest WormRNA release containing non-coding RNA's in the genome vii) confirmed_genes.WS197.gz - DNA sequences of all genes confirmed by EST &/or cDNA
  6 KB (672 words) - 16:43, 21 December 2011
• WS201
  ...wormrna201.tar.gz - latest WormRNA release containing non-coding RNA's in the genome vii) confirmed_genes.WS201.gz - DNA sequences of all genes confirmed by EST &/or cDNA
  6 KB (665 words) - 16:42, 21 December 2011
• WS211
  ...ormrna211.tar.gz - latest WormRNA release containing non-coding RNA's in the genome vii) confirmed_genes.WS211.gz - DNA sequences of all genes confirmed by EST &/or cDNA
  6 KB (766 words) - 16:38, 21 December 2011
• WS179
  ...ormrna179.tar.gz - latest WormRNA release containing non-coding RNA's in the genome vii) confirmed_genes.WS179.gz - DNA sequences of all genes confirmed by EST &/or cDNA
  8 KB (843 words) - 10:53, 21 December 2011
• WS200
  ...ormrna200.tar.gz - latest WormRNA release containing non-coding RNA's in the genome vii) confirmed_genes.WS200.gz - DNA sequences of all genes confirmed by EST &/or cDNA
  6 KB (722 words) - 16:43, 21 December 2011
• WS173
  ...ormrna173.tar.gz - latest WormRNA release containing non-coding RNA's in the genome vii) confirmed_genes.WS173.gz - DNA sequences of all genes confirmed by EST &/or cDNA
  6 KB (639 words) - 10:55, 21 December 2011
• WS206
  ...ormrna206.tar.gz - latest WormRNA release containing non-coding RNA's in the genome vii) confirmed_genes.WS206.gz - DNA sequences of all genes confirmed by EST &/or cDNA
  7 KB (796 words) - 16:46, 21 December 2011
• WS214
  ...ormrna214.tar.gz - latest WormRNA release containing non-coding RNA's in the genome vii) confirmed_genes.WS214.gz - DNA sequences of all genes confirmed by EST &/or cDNA
  6 KB (709 words) - 16:49, 21 December 2011
• WS175
  ...ormrna175.tar.gz - latest WormRNA release containing non-coding RNA's in the genome vii) confirmed_genes.WS175.gz - DNA sequences of all genes confirmed by EST &/or cDNA
  6 KB (680 words) - 10:54, 21 December 2011
• Datatypes flagged
  '''C. elegans''' (default checked): Postgres character name: '''celegans.''' Postgres ta '''C. elegans other than Bristol: ''' Data is present for ''C. elegans'' isolates other than Bristol, such as Hawaiian, CB4855, etc. Postgres char
  12 KB (1,832 words) - 18:43, 11 August 2010
• WormBase Literature Curation Workflow
  |'''Genes and Genetics''' ...blications||Perl script (abstract only), Manual curation: Author, Curator||Genes, CGC names, Sequence names, Other names (synonyms)||
  9 KB (1,174 words) - 18:30, 29 August 2012
• WS180
  ...ormrna180.tar.gz - latest WormRNA release containing non-coding RNA's in the genome vii) confirmed_genes.WS180.gz - DNA sequences of all genes confirmed by EST &/or cDNA
  7 KB (771 words) - 10:52, 21 December 2011
• WS171
  ...ormrna171.tar.gz - latest WormRNA release containing non-coding RNA's in the genome vii) confirmed_genes.WS171.gz - DNA sequences of all genes confirmed by EST &/or cDNA
  6 KB (652 words) - 10:55, 21 December 2011
• WS202
  ...ormrna202.tar.gz - latest WormRNA release containing non-coding RNA's in the genome vii) confirmed_genes.WS202.gz - DNA sequences of all genes confirmed by EST &/or cDNA
  6 KB (770 words) - 11:06, 21 December 2011
• WS131
  ...ormrna131.tar.gz - latest WormRNA release containing non-coding RNA's in the genome vii) confirmed_genes.WS131.gz - DNA sequences of all genes confirmed by EST &/or cDNA
  6 KB (669 words) - 11:18, 21 December 2011
• WS176
  ...ormrna176.tar.gz - latest WormRNA release containing non-coding RNA's in the genome vii) confirmed_genes.WS176.gz - DNA sequences of all genes confirmed by EST &/or cDNA
  7 KB (783 words) - 10:46, 21 December 2011
• WS174
  ...ormrna174.tar.gz - latest WormRNA release containing non-coding RNA's in the genome vii) confirmed_genes.WS174.gz - DNA sequences of all genes confirmed by EST &/or cDNA
  8 KB (938 words) - 10:54, 21 December 2011
• Project page for author first pass form
  If your paper contains experiments on C. elegans and related nematodes, please continue with the form below.<br> ...elegans||Please '''uncheck''' if you are '''not''' reporting data for ''C. elegans''.||
  11 KB (1,688 words) - 11:06, 21 December 2011
• WS163
  ...ormrna163.tar.gz - latest WormRNA release containing non-coding RNA's in the genome vii) confirmed_genes.WS163.gz - DNA sequences of all genes confirmed by EST &/or cDNA
  6 KB (645 words) - 10:57, 21 December 2011
• WormBase-Caltech Weekly Calls May 2012
  *Maybe make a C. elegans Slim Ontology ...as to avoid the problem of mapping to many genes, and each of those mapped genes becoming an interactor in the interaction
  4 KB (695 words) - 15:26, 7 June 2012
• WS189
  ...ormrna189.tar.gz - latest WormRNA release containing non-coding RNA's in the genome vii) confirmed_genes.WS189.gz - DNA sequences of all genes confirmed by EST &/or cDNA
  6 KB (668 words) - 11:01, 21 December 2011
• WS192
  ...ormrna192.tar.gz - latest WormRNA release containing non-coding RNA's in the genome vii) confirmed_genes.WS192.gz - DNA sequences of all genes confirmed by EST &amp;/or cDNA
  6 KB (763 words) - 10:43, 21 December 2011
• WBConfCall 2018.03.01-Agenda and Minutes
  ...rmBase/website/issues/6213 SNPs in specific genomic regions in Hawaiian C. elegans] ...cal interactions, including protein-protein, protein-DNA, protein-RNA, RNA-RNA types
  4 KB (574 words) - 01:54, 2 March 2018
• WS158
  ...ormrna158.tar.gz - latest WormRNA release containing non-coding RNA's in the genome vii) confirmed_genes.WS158.gz - DNA sequences of all genes confirmed by EST &/or cDNA
  6 KB (673 words) - 11:07, 21 December 2011
• WS146
  ...ormrna146.tar.gz - latest WormRNA release containing non-coding RNA's in the genome vii) confirmed_genes.WS146.gz - DNA sequences of all genes confirmed by EST &/or cDNA
  6 KB (670 words) - 11:09, 21 December 2011
• WS135
  ...ormrna135.tar.gz - latest WormRNA release containing non-coding RNA's in the genome vii) confirmed_genes.WS135.gz - DNA sequences of all genes confirmed by EST &/or cDNA
  6 KB (689 words) - 11:19, 21 December 2011
• WS160
  ...ormrna160.tar.gz - latest WormRNA release containing non-coding RNA's in the genome vii) confirmed_genes.WS160.gz - DNA sequences of all genes confirmed by EST &amp;/or cDNA
  6 KB (706 words) - 10:50, 21 December 2011
• WS178
  ...ormrna178.tar.gz - latest WormRNA release containing non-coding RNA's in the genome vii) confirmed_genes.WS178.gz - DNA sequences of all genes confirmed by EST &amp;/or cDNA
  7 KB (762 words) - 10:53, 21 December 2011
• WS181
  ...ormrna181.tar.gz - latest WormRNA release containing non-coding RNA's in the genome vii) confirmed_genes.WS181.gz - DNA sequences of all genes confirmed by EST &amp;/or cDNA
  8 KB (885 words) - 16:47, 21 December 2011
• WS195
  ...chromosome sequences in this release.<br><br>Gene data set (Live C.elegans genes 29879)<br>------------------------------------------<br>Molecular_info&nbsp ...DSs that have more that one coding_transcipt being appearing as non-coding genes in the genome browser has been fixed.&nbsp; This was patched for WS194<br><
  11 KB (1,614 words) - 16:52, 21 December 2011
• WS154
  ...ormrna154.tar.gz - latest WormRNA release containing non-coding RNA's in the genome vii) confirmed_genes.WS154.gz - DNA sequences of all genes confirmed by EST &/or cDNA
  7 KB (749 words) - 11:08, 21 December 2011
• WormBase Model:Gene cluster
  Model changes for the capture clusters of genes with correlated conservation patterns DB_info Database ?Database ?Database_field ?Text //for genes from non WB species
  15 KB (1,645 words) - 18:54, 23 January 2014
• WS193
  ...ormrna193.tar.gz - latest WormRNA release containing non-coding RNA's in the genome vii) confirmed_genes.WS193.gz - DNA sequences of all genes confirmed by EST &amp;/or cDNA
  8 KB (944 words) - 16:52, 21 December 2011
• WS222
  i) confirmed_genes.WS222.gz - DNA sequences of all genes confirmed by EST &/or cDNA ...PCR_product2gene.WS222.gz - Mappings between PCR products and overlapping Genes
  15 KB (1,647 words) - 10:06, 22 December 2010
• WS182
  ...ormrna182.tar.gz - latest WormRNA release containing non-coding RNA's in the genome vii) confirmed_genes.WS182.gz - DNA sequences of all genes confirmed by EST &/or cDNA
  6 KB (716 words) - 16:48, 21 December 2011
• WS225
  i) confirmed_genes.WS225.gz - DNA sequences of all genes confirmed by EST &/or cDNA ...PCR_product2gene.WS225.gz - Mappings between PCR products and overlapping Genes
  16 KB (1,674 words) - 11:38, 20 April 2011
• WS142
  ...ormrna142.tar.gz - latest WormRNA release containing non-coding RNA's in the genome vii) confirmed_genes.WS142.gz - DNA sequences of all genes confirmed by EST &/or cDNA
  7 KB (720 words) - 11:09, 21 December 2011
• WS217
  ...ormrna217.tar.gz - latest WormRNA release containing non-coding RNA's in the genome vii) confirmed_genes.WS217.gz - DNA sequences of all genes confirmed by EST &/or cDNA
  8 KB (915 words) - 11:10, 21 December 2011
• WS138
  ...ormrna138.tar.gz - latest WormRNA release containing non-coding RNA's in the genome vii) confirmed_genes.WS138.gz - DNA sequences of all genes confirmed by EST &/or cDNA
  6 KB (740 words) - 11:19, 21 December 2011
• WormBase Paper Categorization
  ...and organize our thoughts and proposals as to how to best organize the C. elegans corpus (or for nematodes in general), including but not limited to: * Topics commonly studied in C. elegans due to its advantages as a model system
  10 KB (1,279 words) - 18:20, 18 October 2013
• WBConfCall 2022.09.01-Agenda and Minutes
  * New RNA-Seq processing pipeline towards Y4/Y5 of the grant? - okay, mention it * Model single-cell data, and Highlight genes, markers and reagents for that cell/type
  6 KB (982 words) - 16:54, 1 September 2022
• WS194
  ...ormrna194.tar.gz - latest WormRNA release containing non-coding RNA's in the genome vii) confirmed_genes.WS194.gz - DNA sequences of all genes confirmed by EST &amp;/or cDNA
  8 KB (936 words) - 16:48, 21 December 2011
• WS170
  ...ormrna170.tar.gz - latest WormRNA release containing non-coding RNA's in the genome vii) confirmed_genes.WS170.gz - DNA sequences of all genes confirmed by EST &amp;/or cDNA
  8 KB (820 words) - 10:51, 21 December 2011
• WS221
  i) confirmed_genes.WS221.gz - DNA sequences of all genes confirmed by EST &/or cDNA ...PCR_product2gene.WS221.gz - Mappings between PCR products and overlapping Genes
  17 KB (1,758 words) - 16:47, 21 December 2011
• WS172
  ...ormrna172.tar.gz - latest WormRNA release containing non-coding RNA's in the genome vii) confirmed_genes.WS172.gz - DNA sequences of all genes confirmed by EST &amp;/or cDNA
  7 KB (783 words) - 10:55, 21 December 2011
• WS122
  ....gz - latest WormRNA release containing non-coding RNA's in the genome vii) confirmed_genes.WS122.gz - DNA sequences of all genes confirmed by EST &/or cDNA
  6 KB (721 words) - 11:18, 21 December 2011
• WS224
  i) confirmed_genes.WS224.gz - DNA sequences of all genes confirmed by EST &/or cDNA ...PCR_product2gene.WS224.gz - Mappings between PCR products and overlapping Genes
  15 KB (1,583 words) - 11:13, 21 December 2011
• WS218
  i) confirmed_genes.WS218.gz - DNA sequences of all genes confirmed by overlapping Genes
  15 KB (1,756 words) - 11:21, 21 December 2011
• WS223
  i) confirmed_genes.WS223.gz - DNA sequences of all genes confirmed by EST &/or cDNA ...PCR_product2gene.WS223.gz - Mappings between PCR products and overlapping Genes
  15 KB (1,610 words) - 11:20, 21 December 2011
• WS219
  i) confirmed_genes.WS219.gz - DNA sequences of all genes confirmed by EST &/or cDNA ...PCR_product2gene.WS219.gz - Mappings between PCR products and overlapping Genes
  15 KB (1,622 words) - 11:11, 21 December 2011
• Noctua model curation tracking table
  ! Genes | Apoptotic process involved in development - C. elegans NSM sister cell death
  11 KB (1,225 words) - 19:03, 19 March 2018
• WS112
  ...ormrna112.tar.gz - latest WormRNA release containing non-coding RNA's in the genome vii) confirmed_genes.WS112.gz - DNA sequences of all genes confirmed by EST &/or cDNA
  6 KB (735 words) - 11:17, 21 December 2011
• WBConfCall 2011.11.17-Agenda and Minutes
  Orthologies to elegans genes are in GFF file, along with Tier I and II genes have orthologies to tier III proteins. This info.
  7 KB (1,220 words) - 15:50, 25 November 2011
• WormBase-Caltech Weekly Calls June 2015
  === modSeek concise descriptions for C. elegans genes === * Descriptions available for ~70% of the C. elegans genome
  6 KB (982 words) - 15:33, 2 July 2015
• WS190
  ...ormrna190.tar.gz - latest WormRNA release containing non-coding RNA's in the genome vii) confirmed_genes.WS190.gz - DNA sequences of all genes confirmed by EST &amp;/or cDNA
  8 KB (913 words) - 16:46, 21 December 2011
• WS147
  ...ormrna147.tar.gz - latest WormRNA release containing non-coding RNA's in the genome vii) confirmed_genes.WS147.gz - DNA sequences of all genes confirmed by EST &/or cDNA
  7 KB (815 words) - 11:09, 21 December 2011
• WS127
  ...ormrna127.tar.gz - latest WormRNA release containing non-coding RNA's in the genome vii) confirmed_genes.WS127.gz - DNA sequences of all genes confirmed by EST &/or cDNA
  7 KB (872 words) - 11:18, 21 December 2011
• WS220
  i) confirmed_genes.WS220.gz - DNA sequences of all genes confirmed by EST &/or cDNA ...PCR_product2gene.WS220.gz - Mappings between PCR products and overlapping Genes
  16 KB (1,762 words) - 11:10, 21 December 2011
• WS177
  ...ormrna177.tar.gz - latest WormRNA release containing non-coding RNA's in the genome vii) confirmed_genes.WS177.gz - DNA sequences of all genes confirmed by EST &amp;/or cDNA
  9 KB (819 words) - 10:53, 21 December 2011
• WormBase-Caltech Weekly Calls January 2019
  * Valerio generated new files to ignore/filter-out problematic genes ...oduction to the WormBase gene page and tools such as SimpleMine, Tools for RNA seq data and enrichment analysis, gene-related data using WormBase Ontology
  9 KB (1,364 words) - 15:39, 7 February 2019
• WBConfCall 2022.03.17-Agenda and Minutes
  ...ntify, according to our primary and secondary RNAi mapping criteria, which genes are predicted to be knocked down by each clone ** Would entail generating a bolus of mappings between RNA and Gene Targets
  3 KB (563 words) - 03:27, 19 March 2022
• ModENCODE Integration status
  ...de+chromatin+profiling+in+C.+elegans Genome wide chromatin profiling in C. elegans]=== ...ia+of+C.+elegans+3%27UTRs+and+their+regulatory+elements Encyclopedia of C. elegans 3' UTRs and their regulatory elements]===
  17 KB (2,478 words) - 14:07, 5 July 2012
• Automated descriptions for C. briggsae
  ====Location of the concise description files for C. elegans:==== 1. Orthology/Similarity to C. elegans and human <br \>
  14 KB (1,958 words) - 20:14, 2 January 2015
• WS117
  ...ormrna117.tar.gz - latest WormRNA release containing non-coding RNA's in the genome vii) confirmed_genes.WS117.gz - DNA sequences of all genes confirmed by EST &/or cDNA
  6 KB (695 words) - 11:17, 21 December 2011
• WormBase-Caltech Weekly Calls February 2020
  * Maybe it could be taken over by Alliance, as RNA-Seq/Microarray meta data are getting harmonized === VC2010 assembly genes ===
  4 KB (605 words) - 15:21, 3 March 2020
• WS169
  ...ormrna169.tar.gz - latest WormRNA release containing non-coding RNA's in the genome vii) confirmed_genes.WS169.gz - DNA sequences of all genes confirmed by EST &/or cDNA
  8 KB (787 words) - 10:56, 21 December 2011
• WormBase-Caltech Weekly Calls April 2019
  === Canadian C. elegans meeting === ...ystems in cancer research (https://www.fourwav.es/view/1174/info/). The C. elegans conference will be held at the CHUM Research Center in downtown Montréal o
  11 KB (1,676 words) - 15:28, 2 May 2019
• Journal first-pass (jfp) postgres table details
  ...checked)||celegans||Please uncheck if you are not reporting data for ''C. elegans''.|| ...in this paper.||||change instructions to 'Please indicate if data for ''C. elegans'' isolates other than Bristol are presented in this paper."
  16 KB (2,310 words) - 11:05, 21 December 2011
• WS289
  ...S288.ncrna_transcripts.fa.gz - Spliced cDNA sequence for non-coding RNA transcripts ...88.intergenic_sequences.fa.gz - DNA sequence between pairs of adjacent genes
  16 KB (1,733 words) - 21:55, 11 May 2023
• WS231
  ....WS231.ncrna_transcripts.fa.gz - Spliced cDNA sequence for non-coding RNA transcripts ...S231.intergenic_sequences.fa.gz - DNA sequence between pairs of adjacent genes
  16 KB (1,820 words) - 14:15, 13 September 2012
• WormBase-Caltech Weekly Calls September 2016
  === Single-cell RNA profiling === * Some data sets, like tiling arrays, might conclude genes that are expressed in a cell/tissue
  9 KB (1,490 words) - 15:35, 6 October 2016
• WBConfCall 2017-10-05-Agenda and Minutes
  ...ted work at the IWM about depicting gene splicing frequencies derived from RNA-Seq data on a log-scale ...deciding which splice variant(s) is/are the most prevalent, especially for genes with many splice variants
  3 KB (448 words) - 16:04, 5 October 2017
• Topic Curation
  == UPR Genes & Gene Classes == === Genes Involved in Cytoplasmic UPR (Heat Shock Response) ===
  10 KB (1,194 words) - 16:35, 13 December 2013
• WS284
  ...S284.ncrna_transcripts.fa.gz - Spliced cDNA sequence for non-coding RNA transcripts ...84.intergenic_sequences.fa.gz - DNA sequence between pairs of adjacent genes
  17 KB (1,841 words) - 21:54, 11 May 2023
• WormBase-Caltech Weekly Calls December 2013
  === WBPapers sans ''C. elegans'' data === * They don't refer to ''C. elegans'' experiments, but were used to write descriptions with characterizations i
  6 KB (823 words) - 19:38, 2 January 2014
• WS228
  ....WS228.ncrna_transcripts.fa.gz - Spliced cDNA sequence for non-coding RNA transcripts ...S228.intergenic_sequences.fa.gz - DNA sequence between pairs of adjacent genes
  14 KB (1,572 words) - 10:37, 11 November 2011
• Jfp postgres table details
  ...checked)||celegans||Please uncheck if you are not reporting data for ''C. elegans''.|| ...egans'' other than Bristol||cnonbristol ||Please indicate if data for ''C. elegans'' isolates other than N2 (Bristol) are presented in this paper.||
  13 KB (1,960 words) - 11:07, 21 December 2011
• FIGURE(S)
  ...for anything matching ''zyg-1'', one sees a plethora of disparate results: genes with ''zyg-1''<nowiki>* names, protein-coding sequences (CDSes), expression ...a compact but full summary of everything known about a given gene in ''C. elegans''. Even in this excerpt, one can get summarized gene function and orthology
  19 KB (3,061 words) - 23:01, 13 August 2010
• WS234
  ....WS234.ncrna_transcripts.fa.gz - Spliced cDNA sequence for non-coding RNA transcripts ...S234.intergenic_sequences.fa.gz - DNA sequence between pairs of adjacent genes
  15 KB (1,653 words) - 10:13, 18 January 2013
• Modeling data for Infectious agents
  C. elegans serves as an infection model for various bacteria, fungi and nematodes, in *host genes involved in infection and resistance
  15 KB (1,892 words) - 19:54, 10 February 2017
• WS232
  ....WS232.ncrna_transcripts.fa.gz - Spliced cDNA sequence for non-coding RNA transcripts ...S232.intergenic_sequences.fa.gz - DNA sequence between pairs of adjacent genes
  15 KB (1,729 words) - 14:15, 13 September 2012
• UserGuide:Blast Search
  Bioinformatics: A Practical Guide to the Analysis of Genes and Proteins, 2cd ed. A.D. Baxevanis and B.F.F. Ouellette, eds. Wiley-Inter ...ther into a larger alignment. BLAT has a special code to handle introns in RNA/DNA alignments. Therefore, whereas BLAST delivers a list of exons sorted by
  7 KB (1,234 words) - 18:25, 17 August 2010
• WS235
  ....WS235.ncrna_transcripts.fa.gz - Spliced cDNA sequence for non-coding RNA transcripts ...S235.intergenic_sequences.fa.gz - DNA sequence between pairs of adjacent genes
  15 KB (1,708 words) - 10:14, 18 January 2013
• WS227
  ....WS227.ncrna_transcripts.fa.gz - Spliced cDNA sequence for non-coding RNA transcripts ...S227.intergenic_sequences.fa.gz - DNA sequence between pairs of adjacent genes
  15 KB (1,738 words) - 11:20, 21 December 2011
• WS233
  ....WS233.ncrna_transcripts.fa.gz - Spliced cDNA sequence for non-coding RNA transcripts ...S233.intergenic_sequences.fa.gz - DNA sequence between pairs of adjacent genes
  17 KB (2,002 words) - 14:17, 13 September 2012
• Texpresso/Author/Curator interim form
  ...d'''||'''celegans'''||'''Uncheck''' if you are NOT reporting data for ''C. elegans''.|||| ...r than Bristol'''|| '''new field'''|| cnonbristol ||Check if data for ''C. elegans'' natural isolates other than N2 (Bristol) are reported.''e.g. Hawaiian, CB
  17 KB (2,417 words) - 11:04, 21 December 2011
• WormBase-Caltech Weekly Calls January 2015
  * Uberon has elegans anatomy **want to annotate figures with genes - involves model change
  10 KB (1,453 words) - 18:52, 4 February 2015
• WormBase-Caltech Weekly Calls November 2012
  *Including new RNA-seq datasets *Comparing different RNA-seq datasets
  7 KB (1,123 words) - 16:39, 6 December 2012
• WormBase-Caltech Weekly Calls July 2011
  *Relating human disease genes to C. elegans orthologous genes *Maybe make a database object for each C. elegans Interolog Finder interaction
  7 KB (1,117 words) - 16:39, 4 August 2011
• WS230
  ....WS230.ncrna_transcripts.fa.gz - Spliced cDNA sequence for non-coding RNA transcripts ...S230.intergenic_sequences.fa.gz - DNA sequence between pairs of adjacent genes
  17 KB (1,950 words) - 09:37, 7 February 2012
• WS229
  ....WS229.ncrna_transcripts.fa.gz - Spliced cDNA sequence for non-coding RNA transcripts ...S229.intergenic_sequences.fa.gz - DNA sequence between pairs of adjacent genes
  17 KB (1,988 words) - 11:15, 21 December 2011
• WBConfCall 2018.07.19-Agenda and Minutes
  * GO process terms for all C. elegans genes (currently only 9,000 proteins have process; fill in those without data wit * Update gene models/splicing variation with the large amount of RNA-seq data available. Explore methods for visual representation of transcrip
  11 KB (1,649 words) - 16:10, 19 July 2018
• WormBase-Caltech Weekly Calls January 2013
  *Default dumping with species as C. elegans; some data was removed during the dump **Prioritizing genes that have no descriptions
  10 KB (1,553 words) - 18:04, 7 February 2013
• First-pass data types explained
  ...mbol for known locus or new locus defined. Alerts curators to newly cloned genes so that they can update a previously existing concise description, if neede ...o-3(kx94), and glo-3(zu446) were complemented by nDf19...similar to nearby genes vab-3 and daf-12"''; ''"fig.1 ...breakpoint was not mapped precisely but id
  21 KB (3,156 words) - 23:03, 13 August 2010
• WormBase-Caltech Weekly Calls February 2018
  * Some genes have human orthology mentioned in automated descriptions, even though the o * Redundant genes in input list are merged
  12 KB (1,809 words) - 16:33, 1 March 2018
• WS226
  ....WS226.ncrna_transcripts.fa.gz - Spliced cDNA sequence for non-coding RNA transcripts ...S226.intergenic_sequences.fa.gz - DNA sequence between pairs of adjacent genes
  21 KB (2,346 words) - 11:15, 21 December 2011
• UserGuide:Revised Nomenclature
  ...p>Reference genomes in WormBase are given version names, for example <i>C. elegans</i> has the version names: <b>WBcel215</b> (an old version) and <b>WBcel235 ...incompletely assembled, being left as various sizes of contig. Only <i>C. elegans</i> and <i>C. briggsae</i> have been assembled into chromosomes.
  56 KB (9,514 words) - 09:48, 23 October 2015
• UserGuide:Reivsed Nomenclature
  ...p>Reference genomes in WormBase are given version names, for example <i>C. elegans</i> has the version names: <b>WBcel215</b> (an old version) and <b>WBcel235 ...incompletely assembled, being left as various sizes of contig. Only <i>C. elegans</i> and <i>C. briggsae</i> have been assembled into chromosomes.
  56 KB (9,520 words) - 11:51, 21 October 2015
• GSA-GO Linking Summary Tables
  ...t||1||broad||P||transcription of lag-2||GO:0042789 mRNA transcription from RNA polymerase II promoter||Y(kv,c,d,r,k)|||| ...DNA binding RNA polymerase II transcription factor activity AND GO:0001076 RNA polymerase II transcription factor binding transcription factor activity||N
  29 KB (4,227 words) - 18:16, 21 September 2011
• WormBase-Caltech Weekly Calls February 2013
  Dead genes ...modify OA dumping scripts with Juancarlos to automate recognition of dead genes and replace them (if merged)
  8 KB (1,161 words) - 16:34, 7 March 2013
• WormBase-Caltech Weekly Calls October 2019
  ...uancarlos have worked on a SObA-graph based comparison tool to compare two genes for ontology-based annotations ** [https://github.com/obophenotype/c-elegans-gross-anatomy-ontology/pull/23 Made pull request]
  13 KB (2,025 words) - 16:28, 7 November 2019
• LEGO Curation
  *Molecular functions are ''enabled_by'' genes/gene products ...porter CUA-1 Is Required for Systemic Copper Homeostasis in Caenorhabditis elegans. PMID:27881675
  7 KB (1,004 words) - 17:50, 13 February 2017
• Generation of automated descriptions
  ====Obtaining a set of genes and gene names==== ...throw out the dead genes, as we don't want to write descriptions for dead genes.
  65 KB (9,380 words) - 22:39, 5 July 2018
• SOP for generating GO files for citace and GO consortium uploads
  ***Good genes for spot checks: **go_annotation.ace (from OA - orphan genes and ncRNA annotations - this file gets dumped third and last)
  23 KB (3,744 words) - 15:12, 23 December 2022
• WBConfCall 2013.06.20-Agenda and Minutes
  ** [https://github.com/WormBase/website/issues/1438 #1438 Track errors on RNA seq GBrowse view] ...did not address the issue that trying to download all the sequences of all genes in the operon at once results in a blank page. Would someone please check t
  8 KB (1,291 words) - 21:09, 23 June 2013
• WormBase-Caltech Weekly Calls August 2012
  ...ating phenotypes in other species? Particularly useful for genes not in C. elegans, for example ****Cell functions, 10 or 100 highest/preferentially expressed genes, cell connections, cell signals
  12 KB (1,878 words) - 15:55, 6 September 2012
• WS215
  ...ormrna215.tar.gz - latest WormRNA release containing non-coding RNA's in the genome vii) confirmed_genes.WS215.gz - DNA sequences of all genes confirmed by EST &/or cDNA
  19 KB (1,735 words) - 11:07, 21 December 2011
• WormBase-Caltech Weekly Calls April 2014
  * Problems with handling inferred expression of genes in cells ** Still lacking other tools for microarray and RNA-Seq data
  10 KB (1,474 words) - 15:54, 30 April 2014
• COMMENTARY
  ...03). Finally, there are an increasing number of functional annotations for genes, provided both in free text and as Gene Ontology terms (Harris et al., 2004 ...development site to the main site, and be syntenically aligned to the ''C. elegans'' and ''C. briggsae'' genomes.
  30 KB (4,765 words) - 20:03, 11 August 2010
• Gene Ontology
  ...terms will be obsoleted. They are listed below with the number of manual elegans annotations associated: *GO:0003704 specific RNA polymerase II transcription factor activity - 8 (all Kimberly)
  30 KB (3,904 words) - 18:45, 13 May 2020
• VariationConciseDescriptions
  ...[[Generation_of_automated_descriptions | automated concise descriptions of genes]]. <br> ...types. These descriptions aim to recreate summaries like those in the ''C. elegans'' I & II books and enhance them with up to date data. A first step is to ma
  36 KB (5,076 words) - 01:38, 2 March 2016
• OA and scripts for disease data
  #*To indicate the gene that the Variation or Strain refers to, if known, in elegans usually authors state this ...se_model_description||Disease Model Description||dis_diseasemodeldesc||"C. elegans model of Alzeimer's where Abeta expressed."||not required
  36 KB (4,595 words) - 18:10, 15 March 2023
• Contributing Phenotype Connections
  ...types of genetic perturbation info that the form will accept: RNAi target genes, alleles, and transgenes. ...ld accepts recognized gene names using an autocomplete feature, suggesting genes as you type:
  26 KB (4,016 words) - 21:32, 8 April 2020
• Journals
  C.elegans Aging, Stress, Pathogenesis, and Heterochrony Meeting C.elegans Neuronal Development Meeting
  32 KB (4,339 words) - 17:40, 2 November 2010
• FP curator comments for St.Louis and Sanger structure correction data type
  | 3338||deg-3 and des-2 are encoded in a singel C.elegans operon. cDNA of des-2 and deg-3 are isolated and sequenced, however, Genban ...d dystrophin-like mutants display similar phenotypes RT in the nematode C. elegans.; RL Submitted (DEC-1998) to the EMBL/GenBank/DDBJ databases. DR EMBL; AJ13
  40 KB (4,083 words) - 23:02, 13 August 2010
• Model changes to capture and consolidate human disease data
  Disease_modifier_gene "WBGene00000097" //Add Modifier genes from OA ...a Strain, Variation, or Transgene; authors may or may not tell us this, in elegans papers they usually do. Also makes the modeling cleaner and clearer for map
  32 KB (3,649 words) - 20:55, 21 May 2020
• RNAi
  ...containing high degrees of sequence identity to the "target gene". In ''C. elegans'', molecules of dsRNA may be introduced into the worm by a variety of diffe ...ed down in RNAi experiments, as found in the literature pertaining to ''C. elegans'' and related species. There are some important things to consider when cur
  29 KB (4,152 words) - 20:29, 30 July 2019
• Searching WormBase for Information About C. elegans (Wiley)
  ...ormBase contains information about the genomic sequence of C. elegans, its genes and their products, and its higher-level traits such as gene expression pat ...oteins by BLAST hits, sequence motifs, or Gene Ontology terms; aligning C. elegans with C. briggsae genomic sequences; detailed, user-customized searches with
  103 KB (16,375 words) - 23:39, 30 November 2010
• Concise Descriptions
  Before dumping the papers file, double-check the 'Find Dead Genes' list on the paper editor and make any necessary updates. ==Concise Descriptions for Genes Involved in Core Biological Processes==
  47 KB (6,852 words) - 04:27, 8 December 2020
• Expression Pattern
  ...CDS ?CDS XREF Expr_pattern // for coding genes == Genes with expression ==
  104 KB (15,303 words) - 19:39, 11 May 2023
• WS244 Models.wrm
  < Transposon_in_origin // for genes that are identified as having CDSs/Proteins that are Transposon in origin > Transposon_in_origin // for genes that are identified as having CDSs/Proteins that are Transposon in origin
  235 KB (23,325 words) - 10:33, 3 July 2014
• Molecule
  * Public name -> common name in elegans literature ...: Nicotinamide adenine dinucleotide extends the lifespan of Caenorhabditis elegans mediated by sir-2 . 1 and daf-16 .
  50 KB (6,966 words) - 19:15, 13 August 2020
• Pictures
  ...E.g. In the example below, panel B displays the expression of 3 different genes. We will simply name the pictures Fig3_B1, Fig3_B2, Fig3_B3. ...ator of lin-12 activity, encodes a novel nuclear protein in Caenorhabditis elegans <http://www.genetics.org/cgi/content/full/166/1/151>. Copyright (2004) with
  120 KB (19,719 words) - 16:44, 20 October 2023