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• WormBase Model:Expr pattern
  [[WormBase Models]] == Model ==
  4 KB (497 words) - 22:42, 6 December 2010
• WS178
  New release of WormBase WS178, Wormpep178 and Wormrna178 Wed Jul 4 12:56:45 BST 2007 http://www.wormbase.org/wiki/index.php/Release_notes
  7 KB (762 words) - 10:53, 21 December 2011
• WS135
  <pre>New release of WormBase WS135, Wormpep135 and Wormrna135 Thu Nov 11 13:32:31 GMT 2004 http://www.sanger.ac.uk/Projects/C_elegans/WORMBASE
  6 KB (689 words) - 11:19, 21 December 2011
• WS170
  New release of WormBase WS170, Wormpep170 and Wormrna170 Fri Jan 19 09:31:14 GMT 2007 http://www.wormbase.org/wiki/index.php/Release_notes
  8 KB (820 words) - 10:51, 21 December 2011
• WS177
  New release of WormBase WS177, Wormpep177 and Wormrna177 Fri Jun 15 15:39:40 BST 2007 http://www.wormbase.org/wiki/index.php/Release_notes
  9 KB (819 words) - 10:53, 21 December 2011
• WS221
  New release of WormBase WS221, Wormpep221 and Wormrna221 Tue Nov 23 12:32:16 GMT 2010 genomes DIR - contains a sub dir for each WormBase species with sequence, gff, and agp data
  17 KB (1,758 words) - 16:47, 21 December 2011
• WormBase Literature Curation Workflow
  =WormBase Curated Data Types and Curation Methods= ''Please note that this page may be periodically updated as both data types curated, and curation methods used, change and improve.''
  9 KB (1,174 words) - 18:30, 29 August 2012
• WormMine
  [http://intermine.wormbase.org/tools/wormmine/begin.do WormMine] [https://github.com/WormBase/intermine WormMine Github]
  15 KB (2,088 words) - 16:16, 15 October 2020
• WS223
  New release of WormBase WS223, Wormpep223 and Wormrna223 Mon Jan 24 12:12:08 GMT 2011 genomes DIR - contains a sub dir for each WormBase species with sequence, gff, and agp data
  15 KB (1,610 words) - 11:20, 21 December 2011
• WBConfCall 2014.09.18-Agenda and Minutes
  * http://wiki.wormbase.org/index.php/2014_Advisory_Board_Meeting Paul will begin meeting with “ What is WormBase” and his talk will include an introduction to the following topics (not n
  5 KB (763 words) - 00:51, 19 September 2014
• WS289
  New release of WormBase WS288 WS288 was built by Stavros Diamantakis with the input from the WormBase Community and Team. Thank you!
  16 KB (1,733 words) - 21:55, 11 May 2023
• WormBase Models
  = The A - Z of WormBase Models = Document created from [http://cvs.sanger.ac.uk/cgi-bin/viewvc.cgi/wormbase/wspec/models.wrm?root=ensembl&view=markup&pathrev=WS218 WS218] models.
  16 KB (2,207 words) - 23:06, 9 January 2014
• WS284
  New release of WormBase WS284 species/ DIR - contains a sub dir for each WormBase species (G_SPECIES)
  17 KB (1,841 words) - 21:54, 11 May 2023
• WS230
  New release of WormBase WS230 species/ DIR - contains a sub dir for each WormBase species (G_SPECIES) with the following files:
  17 KB (1,950 words) - 09:37, 7 February 2012
• WormBase-Caltech Weekly Calls January 2014
  ...Karen, others are welcome. Visit the construct model requests [http://wiki.wormbase.org/index.php/WormBase_Model:Construct here] ...arned enough Catalyst to create a workable ontology browser on the caltech wormbase sandbox.
  10 KB (1,583 words) - 18:16, 5 February 2014
• Hinxton 2015.07- Meeting minutes
  ** Some species (e.g. P. pac) have few/no gene model changes, but could do with being brought up to latest models and have newes ** MP to create summary of gene model changes for each species
  11 KB (1,714 words) - 11:04, 27 July 2015
• WBConfCall 2014.07.03-Agenda and Minutes
  http://cvs.sanger.ac.uk/cgi-bin/viewvc.cgi/wormbase/wspec/models.wrm?revision=1.404&root=ensembl&view=markup ...ata that only has person communication as evidence. How should users cite WormBase ? How should we make it clear to users that some is published and some isn
  15 KB (2,374 words) - 16:00, 17 July 2014
• Gene Interaction/archive
  Interactor_overlapping_CDS ?CDS XREF Interaction #Interactor_info // CDS of the interacting gene or protein (or related sequence) ...ibing an interactor entity or condition that does not fall into a standard WormBase category
  50 KB (5,228 words) - 15:10, 21 July 2017
• WormBase-Caltech Weekly Calls April 2015
  ** For list of files, see: ftp://ftp.sanger.ac.uk/pub/consortia/wormbase/STAFF/mh6/nightly_geneace/ === WormBase Ontology Browser WS248 online on Dev ===
  8 KB (1,147 words) - 15:33, 7 May 2015
• UserGuide:Reivsed Nomenclature
  .../p><h2>Genomes, assemblies, clones and contigs</h2><p>Reference genomes in WormBase are given version names, for example <i>C. elegans</i> has the version name ...<b>AscSuum_1.0</b> and <b>ASU_2.0</b></p><p>The genomes of most species in WormBase are incompletely assembled, being left as various sizes of contig. Only <i>
  56 KB (9,520 words) - 11:51, 21 October 2015
• UserGuide:Revised Nomenclature
  .../p><h2>Genomes, assemblies, clones and contigs</h2><p>Reference genomes in WormBase are given version names, for example <i>C. elegans</i> has the version name ...<b>AscSuum_1.0</b> and <b>ASU_2.0</b></p><p>The genomes of most species in WormBase are incompletely assembled, being left as various sizes of contig. Only <i>
  56 KB (9,514 words) - 09:48, 23 October 2015
• WormBase-Caltech Weekly Calls September 2013
  *Examples: CDS to Pseudogene changes, gene-to-variation mappings/pairings *What would WormBase look like without any manually curated data?
  8 KB (1,225 words) - 16:33, 3 October 2013
• Working Group:Sequence Features
  ** See github ticket 2867 https://github.com/WormBase/website/issues/2867#issuecomment-48041365 *** How many new objects did you add to WormBase
  23 KB (3,248 words) - 12:58, 22 September 2014
• RNAi
  == RNAi Data Model == This is the ?RNAi data model as of WormBase Release WS251:
  29 KB (4,152 words) - 20:29, 30 July 2019
• Gene Interaction
  ...ed ?Physical_interaction model has also been consolidated into this larger model. Note that #Interaction_info and #Interaction_type have been deprecated. ...Interactor_overlapping_CDS ?CDS XREF Interaction #Interactor_info // CDS of the interacting gene or protein (or related sequence)
  53 KB (6,521 words) - 20:51, 7 March 2019
• FAQs
  ...ww.wormbase.org/about/Frequently_asked_questions FAQ pages] on the new www.wormbase.org site. === How should I cite WormBase? ===
  67 KB (10,954 words) - 09:22, 19 February 2013
• WormBase-Caltech Weekly Calls 2023
  * Trained a small GPT model with C. elegans literature. Reporting some results. ** Current data model at the ABC has negated as a Boolean (true/false).
  36 KB (4,994 words) - 17:27, 14 February 2024
• Gene Regulation
  == Interaction Model as of WS231 == ...ed ?Physical_interaction model has also been consolidated into this larger model. Note that #Interaction_info and #Interaction_type have been deprecated.
  59 KB (8,367 words) - 22:00, 14 December 2018
• Expression Pattern
  Current model (WS280) CDS ?CDS XREF Expr_pattern // for coding genes
  104 KB (15,303 words) - 19:39, 11 May 2023
• Searching WormBase for Information About C. elegans (Wiley)
  ...l traits such as gene expression patterns and neuronal connectivity. Also, WormBase contains sequence and gene structures of C. briggsae and C. remanei, two cl ...n of WormBase available in September, 2005 (WS147 release; BioPerl/Generic Model Organism Database software).
  103 KB (16,375 words) - 23:39, 30 November 2010