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  • NBC sign off documentation
    * File in /usr/local/wormbase/databases/{RELEASE}/orthology and automatically generated by orthology data * mark the elegans/worm genes with omim ortholgs, as caltech is unable to query into the proteins (done b
    4 KB (583 words) - 20:22, 29 July 2011
  • WormBase-Caltech Weekly Calls September 2021
    *microPublication author tracking for all species *stub of person Alliance model already exists made by Adam http://dev.alliancegenome.org:11223/redoc#tag/P
    2 KB (325 words) - 15:24, 7 October 2021
  • WBConfCall 2020.07.16-Agenda and Minutes
    * Protein aligner appears to be broken: https://github.com/WormBase/website/issues/7793 *Are/will HGNC genes be made available as objects in WB so that we can refer to them in differen
    3 KB (529 words) - 18:26, 16 July 2020
  • WBConfCall 2012.02.16-Agenda and Minutes
    ==== Unified Interaction model - Chris & Kimberly ==== * PaulD: The model is OK but is the web capable of displaying it?
    5 KB (800 words) - 10:09, 17 February 2012
  • WBConfCall 2020.06.18-Agenda and Minutes
    ===Testing data for WS278 model changes=== *All disease data files passed Caltech and Hinxton testing
    3 KB (490 words) - 17:22, 18 June 2020
  • December 15, 2010
    ;item 3 - Interaction Model (slides 4-5, attached .ppt in documents distributed section) #Chris and Gary will try to map WormBase interaction types to BioGRID interaction types and figure out what the diff
    3 KB (475 words) - 22:50, 17 December 2010
  • WormBase-Caltech Weekly Calls November 2011
    *When mark a paper, separate into two different types of genes :stable vs unstable **Stable genes map to stable ID
    4 KB (612 words) - 17:13, 1 December 2011
  • WormBase-Caltech Weekly Calls August 2011
    *How do we make sure all papers go through SVM pipeline? Physical Interaction model
    4 KB (650 words) - 17:08, 1 September 2011
  • WormBase-Caltech Weekly Calls May 2020
    * Open to all ...ed to keep in mind that we will have a mapping pipeline to determine which genes are involved for a variation
    5 KB (701 words) - 15:38, 4 June 2020
  • BASIC PROTOCOL 2: PERFORMING A DATABASE SEARCH
    This protocol presents how to conduct a general search of WormBase ...king on the Home link at the top left of any WormBase Web page (http://www.wormbase.org/wiki/index.php/Image:Fig_1_8_01.png).
    3 KB (545 words) - 19:56, 11 August 2010
  • WS146
    <pre>New release of WormBase WS146, Wormpep146 and Wormrna146 Thu Jul 28 14:01:21 BST 2005 vii) confirmed_genes.WS146.gz - DNA sequences of all genes confirmed by EST &/or cDNA
    6 KB (670 words) - 11:09, 21 December 2011
  • WBConfCall 2014.03.06-Agenda and Minutes
    As the modENCODE DCC is overwhelmed with other work, she has proposed that WormBase make the data available to the public. ...o the public could be as simple as just providing a directory where we let all of this sit, or something more complicated.
    5 KB (796 words) - 21:05, 10 March 2014
  • WBConfCall 2018.06.21-Agenda and Minutes
    * http://wiki.wormbase.org/index.php/2018_Advisory_Board_Meeting *?RO_term proposal sent to models@wormbase list
    4 KB (691 words) - 17:16, 21 June 2018
  • WormBase Model:Expr pattern
    [[WormBase Models]] == Model ==
    4 KB (497 words) - 22:42, 6 December 2010
  • WS175
    New release of WormBase WS175, Wormpep175 and Wormrna175 Fri May 4 16:29:43 BST 2007 vii) confirmed_genes.WS175.gz - DNA sequences of all genes confirmed by EST &amp;/or cDNA
    6 KB (680 words) - 10:54, 21 December 2011
  • WBConfCall 2012.12.06-Agenda and Minutes
    = Proposed Model changes = Link to the model changes proposed for WS236 [[WS236_Models.wrm]]
    5 KB (752 words) - 18:55, 6 December 2012
  • WBConfCall 2023.02.02-Agenda and Minutes
    ** Do we want standard Alliance gene pages for all genes from non-canonical species? ...ly be supported on Alliance pages for entities like genes from the related model organism clade/group?
    2 KB (348 words) - 17:52, 2 February 2023
  • WS188
    New release of WormBase WS188, Wormpep188 and Wormrna188 Fri Feb 29 14:53:33 GMT 2008 WS188 was built by [Michael Han (michael.paulini@wormbase.org)]
    6 KB (769 words) - 11:01, 21 December 2011
  • WS216
    New release of WormBase WS216, Wormpep216 and Wormrna216 Tue Jun 29 12:53:35 BST 2010 vii) confirmed_genes.WS216.gz - DNA sequences of all genes confirmed by EST &/or cDNA
    7 KB (818 words) - 11:10, 21 December 2011
  • Haemonchus contortus
    ...ving model nematode ''Caenorhabditis elegans''. This makes it an important model of parasitic nematode biology that is commonly used for experimental studie The current assembly shown at WormBase is from August 2009 and provided by a collaboration of the Wellcome Trust S
    3 KB (493 words) - 16:03, 15 December 2011
  • WS204
    New release of WormBase WS204, Wormpep204 and Wormrna204 Fri Jun 26 20:17:06 BST 2009 vii) confirmed_genes.WS204.gz - DNA sequences of all genes confirmed by EST &/or cDNA
    6 KB (648 words) - 16:16, 21 December 2011
  • WS198
    <pre>New release of WormBase WS198, Wormpep198 and Wormrna198 Thu Dec 18 19:31:36 GMT 2008 vii) confirmed_genes.WS198.gz - DNA sequences of all genes confirmed by EST &amp;/or cDNA
    6 KB (692 words) - 16:51, 21 December 2011
  • WS213
    New release of WormBase WS213, Wormpep213 and Wormrna213 Tue Mar 23 16:36:18 GMT 2010 vii) confirmed_genes.WS213.gz - DNA sequences of all genes confirmed by EST &/or cDNA
    6 KB (764 words) - 16:45, 21 December 2011
  • WormBase Literature Curation Workflow
    =WormBase Curated Data Types and Curation Methods= HMM - Hidden Markov Model
    9 KB (1,174 words) - 18:30, 29 August 2012
  • WS199
    <pre>New release of WormBase WS199, Wormpep199 and Wormrna199 Tue Feb 3 12:09:54 GMT 2009 ...'s in the genome vii) confirmed_genes.WS199.gz - DNA sequences of all genes confirmed by EST &/or cDNA
    6 KB (661 words) - 16:51, 21 December 2011
  • WS205
    New release of WormBase WS205, Wormpep205 and Wormrna205 Wed Jul 22 10:29:27 BST 2009 vii) confirmed_genes.WS205.gz - DNA sequences of all genes confirmed by EST &/or cDNA
    6 KB (711 words) - 16:31, 21 December 2011
  • WS173
    New release of WormBase WS173, Wormpep173 and Wormrna173 Fri Mar 23 18:22:22 GMT 2007 vii) confirmed_genes.WS173.gz - DNA sequences of all genes confirmed by EST &amp;/or cDNA
    6 KB (639 words) - 10:55, 21 December 2011
  • WS187
    New release of WormBase WS187, Wormpep187 and Wormrna187 Fri Jan 25 20:22:16 GMT 2008 vii) confirmed_genes.WS187.gz - DNA sequences of all genes confirmed by EST &/or cDNA
    6 KB (647 words) - 16:43, 21 December 2011
  • WS171
    <nowiki>New release of WormBase WS171, Wormpep171 and Wormrna171 Thu Feb 8 15:28:27 GMT 2007 vii) confirmed_genes.WS171.gz - DNA sequences of all genes confirmed by EST &amp;/or cDNA
    6 KB (652 words) - 10:55, 21 December 2011
  • WormBase-Caltech Weekly Calls June 2015
    * Added remark that optional fields apply to "ALL OBSERVED PHENOTYPES" for an allele * I could not find an ontology that was ready built to adopt; few genetic model organisms, of those, FB has the most useful. Other mods use controlled voca
    6 KB (982 words) - 15:33, 2 July 2015
  • WBConfCall 2014.09.03-Agenda and Minutes
    *http://monarchinitiative.org/ : connects phenotypes, diseases, models, and genes for translational research across species (People involved: Melissa Haendel ...y enthusiastic response from Chris and Nicole about including worm disease model data
    5 KB (807 words) - 18:27, 4 September 2014
  • WS192
    <pre>New release of WormBase WS192, Wormpep192 and Wormrna192 Tue Jun 24 11:23:32 BST 2008 vii) confirmed_genes.WS192.gz - DNA sequences of all genes confirmed by EST &amp;/or cDNA
    6 KB (763 words) - 10:43, 21 December 2011
  • WS203
    New release of WormBase WS203, Wormpep203 and Wormrna203 Thu May 28 13:24:17 BST 2009 vii) confirmed_genes.WS203.gz - DNA sequences of all genes confirmed by EST &/or cDNA
    6 KB (662 words) - 16:50, 21 December 2011
  • WS163
    <pre>New release of WormBase WS163, Wormpep163 and Wormrna163 Thu Aug 17 10:49:02 BST 2006 WS163 was built by Paul Davis [paul.davis@wormbase.org]
    6 KB (645 words) - 10:57, 21 December 2011
  • WS191
    <pre>New release of WormBase WS191, Wormpep191 and Wormrna191 Mon Jun 2 09:50:52 BST 2008 vii) confirmed_genes.WS191.gz - DNA sequences of all genes confirmed by EST &amp;/or cDNA
    6 KB (756 words) - 16:53, 21 December 2011
  • WS196
    <pre>New release of WormBase WS196, Wormpep196 and Wormrna196 Fri Oct 31 16:00:42 GMT 2008 vii) confirmed_genes.WS196.gz - DNA sequences of all genes confirmed by EST &/or cDNA
    6 KB (748 words) - 16:41, 21 December 2011
  • WS208
    New release of WormBase WS208, Wormpep208 and Wormrna208 Tue Oct 27 13:31:22 GMT 2009 vii) confirmed_genes.WS208.gz - DNA sequences of all genes confirmed by EST &/or cDNA
    5 KB (581 words) - 16:50, 21 December 2011
  • WS212
    <pre>New release of WormBase WS212, Wormpep212 and Wormrna212 Mon Mar 1 11:51:04 GMT 2010 vii) confirmed_genes.WS212.gz - DNA sequences of all genes confirmed by EST &/or cDNA
    5 KB (582 words) - 11:16, 21 December 2011
  • WS158
    <pre>New release of WormBase WS158, Wormpep158 and Wormrna158 Thu May 4 13:10:59 BST 2006 WS158 was built by Paul Davis [paul.davis@wormbase.org]
    6 KB (673 words) - 11:07, 21 December 2011
  • WS209
    New release of WormBase WS209, Wormpep209 and Wormrna209 Fri Nov 27 11:57:36 GMT 2009 vii) confirmed_genes.WS209.gz - DNA sequences of all genes confirmed by EST &/or cDNA
    6 KB (687 words) - 16:50, 21 December 2011
  • WS197
    <pre>New release of WormBase WS197, Wormpep197 and Wormrna197 Wed Nov 26 19:40:37 GMT 2008 vii) confirmed_genes.WS197.gz - DNA sequences of all genes confirmed by EST &amp;/or cDNA
    6 KB (672 words) - 16:43, 21 December 2011
  • WS201
    New release of WormBase WS201, Wormpep201 and Wormrna201 Wed Mar 25 15:30:27 GMT 2009 vii) confirmed_genes.WS201.gz - DNA sequences of all genes confirmed by EST &/or cDNA
    6 KB (665 words) - 16:42, 21 December 2011
  • WS160
    New release of WormBase WS160, Wormpep160 and Wormrna160 Thu Jun 15 16:29:46 BST 2006 vii) confirmed_genes.WS160.gz - DNA sequences of all genes confirmed by EST &amp;/or cDNA
    6 KB (706 words) - 10:50, 21 December 2011
  • WormBase-Caltech Weekly Calls December 2014
    * Do we want to capture and distinguish all affiliations? ...reviously only with a text description are getting updated to fit the data model
    4 KB (633 words) - 19:09, 6 January 2015
  • WormBase-Caltech Weekly Calls February 2015
    * What implications does this have for the WormBase Ontology Browser? * We are establishing a pipeline to share all physical and genetic interactions with BioGRID
    8 KB (1,120 words) - 16:19, 5 March 2015
  • WormBase Models
    = The A - Z of WormBase Models = Document created from [http://cvs.sanger.ac.uk/cgi-bin/viewvc.cgi/wormbase/wspec/models.wrm?root=ensembl&view=markup&pathrev=WS218 WS218] models.
    16 KB (2,207 words) - 23:06, 9 January 2014
  • WormBase-Caltech Weekly Calls December 2011
    Interaction model WormBase meeting announcement
    6 KB (903 words) - 16:37, 5 January 2012
  • WS214
    New release of WormBase WS214, Wormpep214 and Wormrna214 Tue Apr 27 15:37:39 BST 2010 vii) confirmed_genes.WS214.gz - DNA sequences of all genes confirmed by EST &/or cDNA
    6 KB (709 words) - 16:49, 21 December 2011
  • WS182
    New release of WormBase WS182, Wormpep182 and Wormrna182 Thu Sep 27 11:59:39 BST 2007 vii) confirmed_genes.WS182.gz - DNA sequences of all genes confirmed by EST &/or cDNA
    6 KB (716 words) - 16:48, 21 December 2011
  • WS147
    <pre>New release of WormBase WS147, Wormpep147 and Wormrna147 Thu Aug 18 16:59:45 BST 2005 vii) confirmed_genes.WS147.gz - DNA sequences of all genes confirmed by EST &/or cDNA
    7 KB (815 words) - 11:09, 21 December 2011

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