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- # Individual Pages #Other pages3 KB (338 words) - 17:04, 6 August 2019
- [http://www.sanger.ac.uk/Projects/C_elegans The Sanger ''C.elegans'' Project Pages] [[Category:User Guide]]640 bytes (97 words) - 22:32, 16 August 2010
- WormBase has Sequence Pages as well as Gene Pages. Sequence Pages are focused on details of the nucleotide and predicted protein-coding seque ..., one can cut and paste it in FASTA format directly into one of the search pages at the NCBI (http://www.ncbi.nlm.nih.gov/BLAST<nowiki>; UNITS 3.3 & 3.42 KB (343 words) - 19:57, 11 August 2010
- ==Individual Pages== [[Category:User Guide]]1 KB (146 words) - 06:23, 12 August 2010
- # The Official WormBase User Guide ...I propose that each WormBase site designate one user as a Wiki czar. This user will occasionally peruse new postings to the Wiki (the software provides se4 KB (573 words) - 02:51, 24 September 2007
- SimpleMine User's Guide: https://wiki.wormbase.org/index.php/UserGuide:SimpleMine ...derived from ModENCODE can be located under the Expression Widget of Gene pages. Documentation: https://wiki.wormbase.org/index.php/UserGuide:RNASeqFPKMGra2 KB (264 words) - 01:36, 1 April 2022
- ...er.ac.uk/Projects/C_elegans/REPEATS/ Sanger Institute pages]]. These pages also have some description of the motifs identified. They can be foun [[Category:User Guide]]2 KB (259 words) - 23:32, 13 August 2010
- ...ne WormBase. For details, see the [http://stein.cshl.org/AcePerl/ AcePerl] pages for information on downloading, installing and using this software. [[Category:User Guide]]711 bytes (108 words) - 11:13, 5 January 2011
- ...rotocols. (That means you!!) Please click on these links to start new WIKI pages and type in your protocols. We will organize them as needed. [[Category:User Guide]]1 KB (133 words) - 22:59, 13 August 2010
- *[[Curation status|Curation status pages]] *[[New 2012 Curation Status|New 2012 Curation Status pages]]3 KB (325 words) - 17:36, 25 April 2023
- ...s page, and a Site Map. This bar appears at the top of all of the WormBase pages and also includes a link back to the home page (http://www.wormbase.org/wik ...database (http://www.wormbase.org/wiki/index.php/Image:Fig_1_8_01.png). A user can choose searches from any of over 20 different data types from the "Sear3 KB (465 words) - 23:40, 30 November 2010
- == 7. New pages of note (Todd; 5 minutes) == * [http://www.wormbase.org/about/userguide--10 User guide]1 KB (202 words) - 12:30, 12 April 2012
- ...‚â•2 results. In the latter case, the search will give one or more summary pages on which the data records found are listed. [[Category:User Guide]]3 KB (545 words) - 19:56, 11 August 2010
- ''map onto animal/link to anatomy pages'' [[Category:User Guide]]2 KB (377 words) - 18:15, 11 August 2010
- To learn how to use these search tools, please read the User's Guide help pages for Basic Search Tools and Advanced Search Tools. [[Category:User Guide]]2 KB (416 words) - 01:03, 22 July 2013
- WormBase has, in addition to Gene and Sequence pages, Protein records that give the known or predicted details of a gene's prote [[Category:User Guide]]3 KB (461 words) - 20:00, 11 August 2010
- Most result pages in WormBase contain a submenu below the main menu and WormBase logo. The su [[Category:User Guide]]2 KB (266 words) - 18:26, 17 August 2010
- == 6. User guide progress; timeline == -- sent a patch for the config this morning (Apr 20) [[User:Mh6|Mh6]]7 KB (1,182 words) - 13:50, 20 April 2012
- ...browse URL]. Alternatively, Neurobrowse is linked on specific Anatomy Term pages in WormBase. [[Category:User Guide]]2 KB (256 words) - 22:25, 5 August 2019
- ...e to cite a specific page, you should use the WormBase "get" URL. Although pages may change or be retired, this special URL ensures that an object of intere [[Category:User Guide]]2 KB (304 words) - 21:19, 5 July 2011
- ...and [http://www.wormbase.org/db/searches/advanced/dumper Batch Sequences] pages. [[Category:User Guide]]2 KB (275 words) - 10:40, 31 January 2013
- Web pages for a single Gene, Sequence, or Protein only allow relatively small amounts [[Category:User Guide]]3 KB (545 words) - 19:45, 11 August 2010
- ...base.org/wiki/index.php/Image:Fig_1_8_03.png). On some ''C. elegans'' Gene pages, there will also be BLASTP hits given against the ''C. briggsae'' genome; c [[Category:User Guide]]4 KB (705 words) - 20:02, 11 August 2010
- Cookies are used by the search pages in order to remember your search settings. Some cookies persist after you e [[Category:User Guide]]2 KB (301 words) - 02:21, 1 April 2012
- *Pristionchus WormBase pages (including Orthologs / WGN/CGC-names) ...php/Main_Page WikiOnchus]] ''Pristionchus'' Wiki (including the beginner's guide to the Pristionchus universe)4 KB (458 words) - 16:08, 15 December 2011
- ...ery WormBase page, or from the Submenu located on each of the Gene Summary pages. When the Genetic Map is accessed via the Main Menu link, a whole-chromosom ...s accessed from the submenu located on the top of each of the Gene Summary pages, a chromosome map is displayed centered upon the gene from which the map wa4 KB (720 words) - 18:28, 17 August 2010
- Majority since last Friday resolved or the user is in direct contact with a curator. ...community at any single point are new/just starting so should adopt a user guide approach/style4 KB (610 words) - 13:12, 14 November 2014
- **Results can be stored and displayed on web pages **2) Training and user interaction7 KB (1,074 words) - 17:19, 4 October 2012
- ...to WormBase. You can link to HTML pages, text-only dumps, images, and XML pages. [[Category:User Guide]]6 KB (1,087 words) - 15:07, 19 June 2014
- *PS1010 WormBase pages (including Orthologs / WGN/CGC-names) [[Category:User Guide]]3 KB (437 words) - 16:02, 15 December 2011
- Bioinformatics: A Practical Guide to the Analysis of Genes and Proteins, 2cd ed. A.D. Baxevanis and B.F.F. Ou ...protein, and can either from Wormbase itself or a sequence supplied by the user. Sequences are automatically provided from WormBase when a BLAST search is7 KB (1,234 words) - 18:25, 17 August 2010
- * Current user guide wiki is outdated * Can we have links to relevant help wiki pages from within the website? Yes, but need to establish standard linking syntax5 KB (776 words) - 16:50, 7 January 2016
- ...contain multiple subclasses with their descriptions and hypertext links to pages containing detailed information on particular subclasses, where available. ...des links to the Sequence report (Gene model) and Protein report (Protein) pages as well as SwissProt database entries, WormPep amino acid sequences and spl7 KB (985 words) - 18:28, 17 August 2010
- ...for ''zyg-1'''''. WormBase organizes its data around a few key hubs. Gene pages are perhaps the most important single such hub; they are intended to give a ...it is given its own Sequence page instead (linked to the Gene and Protein pages). These data are most useful in designing cloning experiments or direct per19 KB (3,061 words) - 23:01, 13 August 2010
- *user friendly forms *updates to curator curation forms to accommodate user submissions7 KB (1,249 words) - 17:23, 7 January 2016
- <br /> Install BioPerl and either MySQL or PostgreSQL. Read the manual pages on Bio::DB::GFF. This describes the API for loading and querying the databa [[Category:User Guide]]11 KB (1,663 words) - 17:45, 16 August 2010
- ...er the genome browser, dump sequences, generate images on the Gene Summary pages, etc. [[Category:User Guide]]8 KB (1,219 words) - 22:33, 24 October 2011
- WormMine can operate on custom lists of data. You can save lists from results pages or create them by uploading lists of identifiers. Lists can be used when ru [[Category:User Guide]]6 KB (1,056 words) - 21:09, 24 June 2013
- ...github.com/WormBase/website/issues/2021 2021]] WikiPathway images on Topic pages - '''NOT HELPDESK''' ...will reply to questions related to WormMine. Wen will make sure that every user gets response from us.6 KB (909 words) - 21:56, 21 November 2013
- *Once in place, we can build pre-canned queries that we can embed in WormBase pages (maybe in response to help desk inquiries) *Open system: any registered user can modify any pathway7 KB (1,123 words) - 16:39, 6 December 2012
- *Suzi Lewis will be setting up a github account for project tracking and wiki pages * User asked for gene IDs for dead genes from list of sequence IDs9 KB (1,336 words) - 15:32, 2 June 2016
- ...t. If the system is configured correctly, you should not need to be a root user in order to update the site. == Quick Start Guide ==34 KB (5,450 words) - 18:24, 17 August 2010
- * How/where is the back end node hosting the user database specified? ...ion of the main [[Administration:Installing_WormBase|Installing WormBase]] guide.32 KB (4,370 words) - 20:48, 18 June 2014
- ** Microreviews? Would want to guide authors what data we want; provide a template? *One user found powerful to be able to use the Galaxy server to do analysis after exp12 KB (1,930 words) - 17:12, 1 February 2018
- ...hrough e-mail at help@wormbase.org and through the on-line WormBase Users' Guide. The WormBase developers group actively invites suggestions for improvement ...f answers to frequently asked questions, a downloadable PDF version of the Guide (for easy reading in printed form), and explanations of many individual par30 KB (4,765 words) - 20:03, 11 August 2010
- ...logging in as root (via "su") or by using "sudo" as a normal user. Normal user prompts (whether sudo-ized or not) are denoted as "%". Long lines that shou ...to create these users and several preliminary directories. Creating a new user and group varies among Unix flavors. On most Linux systems, the following c60 KB (9,496 words) - 23:06, 13 August 2010
- ...erred to the [http://www.wormbase.org/about/Frequently_asked_questions FAQ pages] on the new www.wormbase.org site. --[[User:Raymond|Raymond]] 13:01, 14 July 2009 (EDT)67 KB (10,954 words) - 09:22, 19 February 2013
- ...nded, both by curation of newly available data and by modifications to the user interface. The entire database is updated and rebuilt into a new release ev ...y terms; aligning C. elegans with C. briggsae genomic sequences; detailed, user-customized searches with WormMart or AceDB Query Language; batch downloads103 KB (16,375 words) - 23:39, 30 November 2010
- ''links to relevant pages''<br> [[Example molecule pages]]<br>50 KB (6,966 words) - 19:15, 13 August 2020
- = User Guide = Above is a screenshot of the main page of the Curation Status Form. The user/curator is requested to identify who they wish to login as, and to select o144 KB (18,174 words) - 19:56, 21 January 2021
