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- Term ?Text ...Version UNIQUE Text UNIQUE Text // Lincoln, to store version number of GO2 KB (183 words) - 13:25, 4 October 2010
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- ...rsions of GO terms exist (deprecated, secondary IDs and current), eg., the term 'aging', at least two aging terms come up. (ontology file issue, both exist GO:00075681 KB (202 words) - 00:28, 25 June 2013
- *Entering a new component and GO term using free text ...erm and GO id are entered together in one column and the ID column says no GO id found1 KB (215 words) - 19:04, 11 June 2013
- Gene Ontology (GO) is a controlled vocabulary aimed at capturing three different aspects of a Gene Ontology is extensively documented at the official Web page of the GO Consortium: http://www.geneontology.org and has also been described in the2 KB (361 words) - 18:27, 17 August 2010
- ==Comments concerning GO linking of this paper== *authors discuss many types of 'aging', which are all linking to one GO term "aging"- the authors are setting out to distinguish aging events that occur3 KB (442 words) - 21:09, 1 August 2011
- ==Comments concerning GO linking of this paper== ...because the term in the text is part of a phrase that should have its own term or when linked alone does not reflect the actual meaning of the phrase it i3 KB (511 words) - 21:07, 1 August 2011
- ...s to a page that lists the index of Textpresso Cellular Component Terms to GO Cellular Component (CC) Terms. This index is organized alphabetically and ...ting on GO term names when searching from the Search page or selecting new GO terms during curation.3 KB (431 words) - 14:55, 8 July 2014
- **For the '''Second Dataset''' select '''GO Term''' as we will use this dataset to filter for serine/threonone kinases, ..., and enter <span class="Apple-style-span" style="font-weight: bold;">GO:0004674 (<span class="Apple-style-span" style="font-weight: normal;">protei2 KB (305 words) - 10:42, 31 January 2013
- The Gene Ontology (GO) project (www.geneontology.org) has a central goal of building a controlled ...Ontology project is extensively documented at the official web page of the GO consortium: http://www.geneontology.org3 KB (502 words) - 18:28, 17 August 2010
- #GO term ##Search could be on GO ID or term string.5 KB (764 words) - 21:17, 18 March 2013
- Note: only one search failed - the GO term search using string 'M band'. Everything else worked great. *GO Term911 bytes (147 words) - 20:11, 9 May 2013
- ...t a paper could have benefited from protein complexes being linked to SGD GO pages. ...ce for linking needs to be made more clear as this will drive the types of GO links made.2 KB (361 words) - 23:31, 11 January 2011
- ...nnotation] IDs of Type" checkbox, select "[Function] GO Term ID" and enter GO:0003700 in the box below (corresponds to transcription factor activity) ..."Function" and select "GO Term Info (merged)" checkbox (if you want to see GO annotations in addition to attributes selected by default, which you can ch2 KB (296 words) - 10:43, 31 January 2013
- :anatomy-term/term (6785 values, 0 evidence) :anatomy-term/evidence EMPTY7 KB (604 words) - 18:21, 11 November 2014
- There is a 'download' button inside each widget, or you could go directly to the url eg. In the long term, we will have a page that documents the API.437 bytes (73 words) - 22:41, 27 January 2011
- ==Mapping of GO OA fields to Postgres table names== *GO -- gop_goontology4 KB (759 words) - 23:35, 26 February 2017
- == GO term enrichment (TE) tool for WormBase == * I've done some groundwork on how we could implement the Panther GO TE tool for both C. elegans and the other core species. (Jane Lomax)3 KB (539 words) - 10:56, 5 June 2015
- ...tab bar and one just below it. Both boxes generate similar results and any term can be searched, such as: * GO term IDs, i.e. GO:0000012 KB (303 words) - 19:36, 13 November 2018
- ...distribution of GO terms is displayed in pie charts, one pie chart per GO term type. In the pie charts, slices that correspond to less than a threshold (c sub go_pie_charts: sub-component that renders GO Term pie charts2 KB (328 words) - 23:39, 13 August 2010
- *carrier different term from that defined by GO *ER -refers to a camera mount in the paper, not the GO term6 KB (970 words) - 19:52, 2 August 2011
- Anatomy_term "WBbt:0003955" "WBls:000000?" "GO:0000???" "GO:0000???" For instance the ALA anatomy term has 11 life stages appended in the tree view. the .ace will look like5 KB (702 words) - 12:59, 5 May 2014
- *compare ‘GO_term "GO:000nnnn”’ in the gp_annotation.ace and exp_goid in ExprOA and output: a) count and WBpaper list of papers that have matching GO annotations2 KB (344 words) - 20:49, 10 February 2017
- ...ase to describe relations between entities in the database, e.g. genes and GO terms. **Term3 KB (453 words) - 18:27, 20 September 2023
- term: all stages goid: LS:0000002 definition: All C. elegans development stages, term: embryo goid: LS:0000003 definition: The whole period of embryogenesis, fro19 KB (3,891 words) - 18:26, 17 August 2010
- ...in class, # concise descriptions, # of cloned genes, list of all GO-bp and GO-mf associated with genes in class ===Gene_class term info file===4 KB (704 words) - 18:19, 28 June 2011
- *file format - does dictyBase produce a gpi for GO? See: http://wiki.geneontology.org/index.php/Gene_Product_Data_File_Forma *GO term identifier (already available in Dump Annotation File)1 KB (205 words) - 17:10, 8 November 2012
- =Trial runs with linking GO terms in GSA papers= *only the GO lexicon from AmiGo will be used13 KB (2,118 words) - 16:51, 20 September 2011
- GO term - GO ID mappings2 KB (204 words) - 19:18, 17 November 2011
- Orthology/Homology and the GO annotations for Process, Function and Cell component. 6) #Qualifier - Additions to combine life stage with anatomy term in expression pattern annotation.3 KB (413 words) - 15:51, 18 September 2014
- === GO Alliance slim terms === * We need to update our GO slim terms for WB GO ribbons to be in sync with Alliance5 KB (759 words) - 15:02, 11 September 2019
- ?SO_term Term ?Text Version SOFA_ontology UNIQUE Float // Analogous to GO, the SO version number is only to be attached1 KB (117 words) - 09:34, 5 October 2010
- *Output file: go.ace **Script on tazendra: /home/acedb/kimberly/citace_upload/go/ontology2ace/go_obo2ace/go_obo_to_go_ace.pl15 KB (1,936 words) - 16:29, 29 June 2018
- ...h term, click on the "Remove" button to the right of the particular search term. Clicking on it will bring you new results. ...ase check WormBase Advanced Search for instructions on how to use AQL. Or, go to http://www.acedb.org/Software/whelp/AQL/.2 KB (315 words) - 18:27, 17 August 2010
- The new pipeline for uploading manual GO annotations will be different in that we will now get our manual annotation ...l and InterPro2GO GAF (see below) and the combined file is uploaded to the GO repository.3 KB (495 words) - 15:15, 24 August 2012
- == GO-CAM model/pathway curation with orthology data == - GO term data will address this issue2 KB (303 words) - 18:23, 16 April 2020
- Back to [[GO entity markup]] | align="center" style="background:#f0f0f0;"|'''Linked Term in Abstract'''29 KB (4,227 words) - 18:16, 21 September 2011
- GO Term Enrichment: This table shows terms from the gene ontology that are signific ...nome column has the number of genes in the entire genome annotated to that term.6 KB (964 words) - 18:49, 22 May 2018
- ...gory terms and their mapping, based on previous curation, to a GO term and GO ID. ...an autocomplete to add GO terms which should avoid any future errors in GO term entry.11 KB (1,765 words) - 15:10, 18 February 2014
- In the acedb user account on Tazendra at:/home/acedb/ranjana/GO: #copy the right go.go.<date> file from /home/acedb/ranjana/citace_upload/go_curation/go_dumper_fi4 KB (629 words) - 18:27, 23 November 2020
- -- Simplify info representation; focus on term less the method -- Action Items: Look into GO details page for ideas for rendering table; See SGDs3 KB (423 words) - 18:20, 14 February 2011
- ...lack list and filtering based upon papers already annotated with Component term in gaf file **Organization of categories by task? e.g. GO curation, Phenotype curation, Expression patterns, etc.6 KB (901 words) - 19:21, 29 November 2011
- ...ype2GO-based GO annotations will be handled for future WormBase builds and GO uploads. *If the perturbation is an RNAi experiment, we will only associate the GO annotations with phenotypes resulting from disruption of the primary target7 KB (1,164 words) - 17:54, 19 February 2015
- ...staff can take vacations. They can also help develop new web tools. Short term goal: get low hanging fruits first (SPELL, ModSEEK ...) ...l give a talk about Textpresso central and mining, also have a workshop on GO curation and LEGO.2 KB (339 words) - 18:43, 8 April 2016
- ** Term * We'll only include the Term entries6 KB (834 words) - 17:56, 15 June 2020
- 1. Go to the main page, either by entering its URL http://wormbase.org, or by cli ...any). If a single data record is found, the search routine will sometimes go directly to the Web page for that record (it will automatically do this for3 KB (545 words) - 19:56, 11 August 2010
- ...ene Ontology consortium to specify how gene associations to Gene Ontology (GO) terms would be reported in a tab-delimited download file. http://geneontology.org/docs/go-annotation-file-gaf-format-2.0/12 KB (1,718 words) - 17:45, 5 February 2021
- Term ?Text ...Version UNIQUE Text UNIQUE Text // Lincoln, to store version number of GO2 KB (183 words) - 13:25, 4 October 2010
- * Will go ahead and send emails for only new set of papers (won't resend requests for * Maybe go back to papers that already had a request sent at the 6 month time point5 KB (818 words) - 15:55, 1 November 2018
- 1) Remove the Term tag. The name of the GO_term would be populated in the 2) Add an Alt_id tag to populate secondary IDs as listed in the GO obo3 KB (433 words) - 08:32, 22 June 2015
- ...geal pumping phenotypes that were measured by EPGs be annotated with this term? These questions highlight a need to revisit the pharyngeal phenotype bran ...any other person interested in the group to help with pharyngeal phenotype term organization7 KB (1,073 words) - 16:26, 2 March 2017
- ** Phenotype, anatomy ontologies, GO, etc. === Anatomy term acronyms ===3 KB (427 words) - 15:32, 1 August 2019
