User contributions
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Jump to navigationJump to search- 20:04, 23 October 2013 diff hist +5,616 Administration:Installing WormMine Added question about integration exception.
- 19:25, 23 October 2013 diff hist +370 Administration:Installing WormMine Added development documentation request.
- 19:13, 23 October 2013 diff hist +101 Administration:Installing WormMine Added question about WormMine archives.
- 18:14, 23 October 2013 diff hist +306 Administration:Installing WormMine Added request for documenting AceDB converter.
- 17:27, 23 October 2013 diff hist +293 Administration:Installing WormMine Added questions about branches in the "intermine" repo.
- 17:08, 23 October 2013 diff hist +280 Administration:Installing WormMine Requested list of files that need updating when incrementing the version number.
- 14:44, 23 October 2013 diff hist +208 m Administration:Installing WormMine
- 14:37, 23 October 2013 diff hist +137 Administration:Installing WormMine Updated question with more information when running "../bio/scripts/project_build -b -v -a a_suum-gff3-gene localhost joachim_ws239_2" individually.
- 13:49, 23 October 2013 diff hist +12,444 Administration:Installing WormMine Added question about the build process and missing directory.
- 19:10, 22 October 2013 diff hist +268 Administration:Installing WormMine Added question about specific WormMine Java implementation.
- 18:52, 22 October 2013 diff hist +5,244 Administration:Installing WormMine Added information about executing just the a_suum-gff3-gene action that causes a build error.
- 17:22, 22 October 2013 diff hist +5,352 Administration:Installing WormMine Added question regarding WormMine build.
- 19:35, 21 October 2013 diff hist +136 Administration:Installing WormMine Added question about manual data dump generation and species specificity.
- 17:42, 21 October 2013 diff hist +200 Administration:Installing WormMine Added request that moving from one machine to another machine to continue the build is indicated better.
- 17:35, 21 October 2013 diff hist -1 m Administration:Installing WormMine →Manual queries
- 17:35, 21 October 2013 diff hist +251 Administration:Installing WormMine Added question about manual queries. Unclear what needs to be run.
- 13:55, 21 October 2013 diff hist +334 Administration:Installing WormMine Added questions about migrating to production.
- 19:34, 18 October 2013 diff hist +40 Administration:Installing WormMine Updated BUILD FAILED description with information about WormBase version used.
- 18:50, 18 October 2013 diff hist +147 Administration:Installing WormMine Added question regarding tace failure during dump.
- 18:38, 18 October 2013 diff hist +379 Administration:Installing WormMine →Quick Overview
- 18:32, 18 October 2013 diff hist +98 Administration:Installing WormMine →Quick Overview
- 18:11, 18 October 2013 diff hist +320 Administration:Installing WormMine Added question about ace_classes-test.txt again.
- 16:08, 18 October 2013 diff hist +167 Administration:Installing WormMine Added question about required disk space on a per-directory basis.
- 15:57, 18 October 2013 diff hist +625 Administration:Installing WormMine Added question about tace being killed during AceDB data dumping process.
- 14:32, 18 October 2013 diff hist +493 Administration:Installing WormMine Added troubleshooting section to redeployment build section.
- 20:07, 17 October 2013 diff hist +83 Administration:Installing WormMine →Build Steps (Preliminary Info)
- 19:26, 17 October 2013 diff hist +666 Administration:Installing WormMine Added comment about JSON error.
- 19:23, 17 October 2013 diff hist +244 Administration:Installing WormMine →Acquire and pre-process data files
- 17:59, 17 October 2013 diff hist +450 Administration:Installing WormMine Requesting a basic overflow of the complete mine life-cycle.
- 17:32, 17 October 2013 diff hist +1,904 Administration:Installing WormMine Added question about creating an AceDB dump.
- 16:30, 17 October 2013 diff hist +12 m Administration:Installing WormMine →Generate data files
- 16:30, 17 October 2013 diff hist +358 Administration:Installing WormMine Added question about build processes' hardcoded paths.
- 16:17, 17 October 2013 diff hist +125 Administration:Installing WormMine Added question regarding env vars.
- 15:49, 17 October 2013 diff hist +286 Administration:Installing WormMine Added questions about recovering from build failures.
- 14:48, 17 October 2013 diff hist +351 Administration:Installing WormMine Added questions about the build process.
- 17:51, 16 October 2013 diff hist +398 Administration:Installing WormMine Added information on copying an existing database.
- 16:44, 16 October 2013 diff hist +483 Administration:Installing WormMine Added information about configuring Tomcat port number.
- 16:29, 16 October 2013 diff hist +213 Administration:Installing WormMine Basic instructions on stopping/starting Tomcat.
- 16:04, 16 October 2013 diff hist +102 Administration:Installing WormMine Instructions added for working with the development version of WormBase InterMine.
- 15:40, 7 October 2013 diff hist +65 Administration:Installing WormMine Added not that origin "unmerged" is not defined where it is being used.
- 15:36, 7 October 2013 diff hist +4 Administration:Installing WormMine Changed repo URL on Github, so that everyone can checkout the code.
- 13:55, 7 October 2013 diff hist +285 Unit Testing Added description about required packages for GBrowse testing.
- 13:36, 7 October 2013 diff hist +2,316 Unit Testing Added output of reference set generation for WS239.
- 14:50, 26 September 2013 diff hist +435 Website:Visualization with ggplot2 of the R-Project Added ggplot2 installation instructions.
- 16:25, 19 September 2013 diff hist +148 m Website:GBrowse Set-up on dev.wormbase.org Added comment on replacing/keeping configuration files.
- 16:20, 19 September 2013 diff hist +2,083 N Website:GBrowse Set-up on dev.wormbase.org Instructions on building your own GBrowse installation.
- 15:48, 19 September 2013 diff hist +173 Developer documentation Added link-out to GBrowse installation page tailored to dev setup.
- 19:35, 9 September 2013 diff hist +104 Website:Visualization with ggplot2 of the R-Project Added information about starting Rserve.
- 19:32, 9 September 2013 diff hist -6 m Website:Visualization with ggplot2 of the R-Project
- 19:32, 9 September 2013 diff hist +643 N Website:Visualization with ggplot2 of the R-Project Installation instructions.
- 19:20, 9 September 2013 diff hist +165 m Developer documentation
- 18:49, 4 September 2013 diff hist +2 Unit Testing Bugfix. Documentation for running a particular API test was giving a wrong example.
- 17:08, 3 September 2013 diff hist -4 m Website:Genome Browser Survey
- 19:36, 29 August 2013 diff hist +3,724 GFF Release Data and Changes Added report on WS239. current
- 15:48, 27 August 2013 diff hist +30 m Website:Visualization Library Assessment Highlighted that only D3 can do all chart types.
- 15:44, 27 August 2013 diff hist +361 Website:Visualization Library Assessment Updated lib performance regarding heatmap plotting.
- 14:31, 27 August 2013 diff hist +526 m Website:Visualization Library Assessment Added table template for filling in status of scientific plotting on a per library basis.
- 13:35, 27 August 2013 diff hist +197 N Website:Visualization Library Assessment Created page with 'June 2012 blog post about various JavaScript visualization libraries: [http://kraskniga.blogspot.ca/2012/06/comparison-of-javascript-data.html Comparison of JavaScript Data Visua…'
- 13:33, 27 August 2013 diff hist +127 m Developer documentation Added link-out to visualization assessment.
- 14:54, 26 August 2013 diff hist +143 Unit Testing Added description about how to run individual unit tests.
- 19:25, 1 August 2013 diff hist +11 m Unit Testing
- 19:20, 1 August 2013 diff hist +74 Unit Testing Updated reference set generation output on staging.
- 14:53, 25 July 2013 diff hist +114 Unit Testing Added information about the logfile that is kept for GBrowse tests.
- 15:56, 24 July 2013 diff hist +2,097 Unit Testing Added current output from staging.
- 19:42, 19 July 2013 diff hist +129 Unit Testing Added explanation on how to create the GBrowse reference image set.
- 19:41, 19 July 2013 diff hist +376 Unit Testing Added GBrowse comparative test explanation.
- 13:20, 9 July 2013 diff hist +1,056 Website:Genome Browser Survey Added questions about data content. Added short header with summary of the discussion Todd and I had.
- 16:41, 8 July 2013 diff hist +324 Website:Genome Browser Survey
- 16:34, 8 July 2013 diff hist +177 Website:Genome Browser Survey
- 16:32, 8 July 2013 diff hist +14 Website:Genome Browser Survey
- 16:32, 8 July 2013 diff hist +81 Website:Genome Browser Survey
- 16:29, 8 July 2013 diff hist +696 Website:Genome Browser Survey
- 16:17, 8 July 2013 diff hist +181 Website:Genome Browser Survey
- 16:10, 8 July 2013 diff hist +637 Website:Genome Browser Survey
- 15:39, 8 July 2013 diff hist +222 Website:Genome Browser Survey
- 15:33, 8 July 2013 diff hist +2,263 N Website:Genome Browser Survey Created page with '== Worm Community Survey == This questionnaire will be send to the worm community via SurveyMonkey. '''Q:''' How frequent do you use the current WormBase genome browser? * ever…'
- 14:38, 8 July 2013 diff hist +161 m Developer documentation Added link to impending genome browser survey.
- 13:49, 18 June 2013 diff hist +1,889 Unit Testing Basic unit testing description.
- 20:42, 17 June 2013 diff hist +4 N Unit Testing Created page with 'TODO'
- 20:42, 17 June 2013 diff hist +17 Developer documentation
- 18:08, 30 May 2013 diff hist +252 GFF Release Data and Changes Added SQL commands that explain how I retrieve names from GFF2/GFF3 tables.
- 15:24, 29 May 2013 diff hist +160 GFF Release Data and Changes Format comparison: WS237 vs WS238.
- 14:15, 29 May 2013 diff hist +117 GFF Release Data and Changes Added overview of which datasets contain bioproject IDs as part of their landmark.
- 21:01, 28 May 2013 diff hist +1,051 N GFF Release Data and Changes Started a summary page for tracking data format changes.
- 20:35, 28 May 2013 diff hist +34 Developer documentation →Data Model and Data Development
- 17:45, 21 May 2013 diff hist +123 Issues-5/21/2013