Difference between revisions of "Process page mock-ups"
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Revision as of 18:22, 8 July 2009
Contents
- 1 Notes for process pages
- 2 Processes in C. elegans
- 2.1 Cell division
- 2.2 Cell death
- 2.3 Autophagy
- 2.4 Dauer arrest
- 2.5 L1 arrest
- 2.6 Embryonic blastomere specification
- 2.7 Embryonic mesendoderm development
- 2.8 Pharynx development
- 2.9 Gonad development
- 2.10 Germ line development
- 2.11 Spermatogenesis
- 2.12 Oogenesis
- 2.13 Sex determination
- 2.14 Dosage compensation
- 2.15 Male-specific development
- 2.16 Vulval development
- 2.17 P11/P12 specification
- 2.18 duct development
- 2.19 Cell migration
- 2.20 Neuronal regeneration
- 2.21 Neuronal migration
- 2.22 Molting
- 2.23 Cell specification
- 2.24 Axis formation
- 2.25 Chemosensation
- 2.26 Mechanosensation
- 2.27 Synaptic transmission
- 2.28 muscle structure
- 2.29 Behavioral plasticity
- 2.30 Locomotion
- 2.31 Feeding (Pharyngeal pumping)
- 2.32 Defecation
- 2.33 Ovulation
- 2.34 Egg-laying
- 2.35 Male Mating
- 2.36 Sleep
- 2.37 Pathogen Response
Notes for process pages
- Pathway databases
- BioCyc: Peter Karp, SRI, PathoLogic tools,
- KEGG:
- C. elegans specific db, Armand Leroi's, NMR-based metabolomic data using MetaShark for assigning enzyme classification
- WikiPathways: Alex Pico, Gladstone, GenMAPP Pathway Markup Language (GPML), PathVisio
- Reactome: Peter D'Eustachio, Lisa Matthews
- NEMAPATH: Makedonka Mitreva, nematode.net, nonelegans
- Visualization software
- Cytoscape
- GenMAPP
- PathVisio
Processes in C. elegans
Cell division
Cell death
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|
Autophagy
Dauer arrest
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|
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L1 arrest
Embryonic blastomere specification
Embryonic mesendoderm development
Pharynx development
Gonad development
Germ line development
Spermatogenesis
Oogenesis
Sex determination
Dosage compensation
Male-specific development
|
Vulval development
|
|
|
P11/P12 specification
duct development
Cell migration
|
Neuronal regeneration
Neuronal migration
Molting
Cell specification
Axis formation
|
|
Chemosensation
|
|
Mechanosensation
Synaptic transmission
muscle structure
Behavioral plasticity
Locomotion
|
Feeding (Pharyngeal pumping)
Defecation
Ovulation
Egg-laying
Male Mating
|
Sleep
Pathogen Response
|