Difference between revisions of "OA forms, tables, scripts, etc"
From WormBaseWiki
Jump to navigationJump to searchLine 3: | Line 3: | ||
|'''OA form'''||'''Curation focus'''||'''Postgres Tables'''||'''Dumper Script'''||'''Ontologies used'''||'''Other dependencies'''||'''Curator'''||'''Other remarks''' | |'''OA form'''||'''Curation focus'''||'''Postgres Tables'''||'''Dumper Script'''||'''Ontologies used'''||'''Other dependencies'''||'''Curator'''||'''Other remarks''' | ||
|- | |- | ||
− | |antibody<br>[http://wiki.wormbase.org/index.php/WormBase_Model:Antibody model]||||Antibody objects||abp_ ||/home/acedb/xiaodong/antibody/use_package.pl ||Paper<br>Gene<br>Laboratory<br> || ||Xiaodong Wang|| | + | |antibody<br>[http://wiki.wormbase.org/index.php/WormBase_Model:Antibody antibody model]||||Antibody objects||abp_ ||/home/acedb/xiaodong/antibody/use_package.pl ||Paper<br>Gene<br>Laboratory<br> || ||Xiaodong Wang|| |
|- | |- | ||
|concise||Concise Description||con_ ||/home/acedb/kimberly/citace_upload/concise/wrapper.pl and /home/postgres/work/citace_upload/concise/dump_concise.pl ||n/a ||n/a ||Ranjana Kishore, Kimberly Van Auken|| | |concise||Concise Description||con_ ||/home/acedb/kimberly/citace_upload/concise/wrapper.pl and /home/postgres/work/citace_upload/concise/dump_concise.pl ||n/a ||n/a ||Ranjana Kishore, Kimberly Van Auken|| | ||
Line 9: | Line 9: | ||
|disease||Worm models of human disease||dis_ || || || ||Ranjana Kishore|| | |disease||Worm models of human disease||dis_ || || || ||Ranjana Kishore|| | ||
|- | |- | ||
− | |exprpat||Expression pattern of genes||expr_ ||/home/acedb/draciti/oa_expr_ace_dumper/use_package.pl ||Paper<br> Gene<br> Anatomy<br> GO<br> Lifestage<br> Type<br> Transgene<br> Antibody<br> Clone<br> Strain<br> Laboratory<br> || ||Daniela Raciti|| | + | |exprpat<br>[http://wiki.wormbase.org/index.php/WormBase_Model:Expr_pattern expression pattern model]||Expression pattern of genes||expr_ ||/home/acedb/draciti/oa_expr_ace_dumper/use_package.pl ||Paper<br> Gene<br> Anatomy<br> GO<br> Lifestage<br> Type<br> Transgene<br> Antibody<br> Clone<br> Strain<br> Laboratory<br> || ||Daniela Raciti|| |
|- | |- | ||
− | |gene class||Concise description of gene classes|| || ||Gene <br> Paper|| ||Karen Yook|| | + | |gene class<br>[http://wiki.wormbase.org/index.php/WormBase_Model:Gene_class gene class model]||Concise description of gene classes|| || ||Gene <br> Paper|| ||Karen Yook|| |
|- | |- | ||
|go||Gene ontology annotation|| || || || ||Kimberly Van Auken, Ranjana Kishore||GO pipeline is currently in flux as we migrate to using Protein2GO | |go||Gene ontology annotation|| || || || ||Kimberly Van Auken, Ranjana Kishore||GO pipeline is currently in flux as we migrate to using Protein2GO | ||
|- | |- | ||
− | |[[Gene_Regulation|genereg]]||Gene regulation||grg_<br> [[Gene_Regulation#.ACE_Dumper_Script|grg_tables]]|| /home/postgres/work/citace_upload/gene_regulation/use_package.pl ||Paper<br> Interaction<br> RNAi<br> Antibody<br> Transgene<br> Variation<br> Rearrangement<br> Expr_pattern<br> Sentence<br> Gene<br> Molecule<br> Sequence<br> Anatomy<br> Lifestage<br> ||/home/postgres/work/citace_upload/gene_regulation/get_gene_regulation_ace.pm <br> (Required Perl module) ||Xiaodong Wang|| | + | |[[Gene_Regulation|genereg]]<br>[http://wiki.wormbase.org/index.php/WormBase_Model:Gene_regulation gene regulation model]||Gene regulation||grg_<br> [[Gene_Regulation#.ACE_Dumper_Script|grg_tables]]|| /home/postgres/work/citace_upload/gene_regulation/use_package.pl ||Paper<br> Interaction<br> RNAi<br> Antibody<br> Transgene<br> Variation<br> Rearrangement<br> Expr_pattern<br> Sentence<br> Gene<br> Molecule<br> Sequence<br> Anatomy<br> Lifestage<br> ||/home/postgres/work/citace_upload/gene_regulation/get_gene_regulation_ace.pm <br> (Required Perl module) ||Xiaodong Wang|| |
|- | |- | ||
− | |[[Gene_Interaction|interaction]]||Genetic and physical interactions||int_<br> [[Gene_Interaction#Postgres_Table_Names|int_tables]]|| /home/postgres/work/citace_upload/interaction/use_package.pl ||Paper<br> Gene<br> Variation<br> Phenotype<br> Person<br> Laboratory<br> Antibody<br> Rearrangement<br> Transgene<br> RNAi<br> ||/home/acedb/xiaodong/assigning_interaction_ids/assign_interaction_ids.pl <br> Nightly [[Gene_Interaction#Nightly_Cron_Job_to_Assign_New_Interaction_IDs|cronjob script]] to assign Interaction IDs to PGIDs that do not already have one ||Chris Grove, Gary Schindelman, Kimberly Van Auken, Karen Yook|| Only one PGID per Interaction object. Some physical interactions are currently in BioGrid and will need to be migrated to postgres. | + | |[[Gene_Interaction|interaction]]<br>[http://wiki.wormbase.org/index.php/WormBase_Model:Interaction gene interaction model]||Genetic and physical interactions||int_<br> [[Gene_Interaction#Postgres_Table_Names|int_tables]]|| /home/postgres/work/citace_upload/interaction/use_package.pl ||Paper<br> Gene<br> Variation<br> Phenotype<br> Person<br> Laboratory<br> Antibody<br> Rearrangement<br> Transgene<br> RNAi<br> ||/home/acedb/xiaodong/assigning_interaction_ids/assign_interaction_ids.pl <br> Nightly [[Gene_Interaction#Nightly_Cron_Job_to_Assign_New_Interaction_IDs|cronjob script]] to assign Interaction IDs to PGIDs that do not already have one ||Chris Grove, Gary Schindelman, Kimberly Van Auken, Karen Yook|| Only one PGID per Interaction object. Some physical interactions are currently in BioGrid and will need to be migrated to postgres. |
|- | |- | ||
− | |[[Molecule |molecule]]<br>[http://wiki.wormbase.org/index.php/WormBase_Model:Molecule model]||Drug/Chemical/Small molecule objects ||mop_<br>[http://wiki.wormbase.org/index.php/Molecule#mop_tables mop_tables] ||acedb/karen/Molecule/dump_molecule_ace.pl<br>acedb/karen/Molecule/database.ace ||Paper<br> Chebi<br> || ||Karen Yook || | + | |[[Molecule |molecule]]<br>[http://wiki.wormbase.org/index.php/WormBase_Model:Molecule molecule model]||Drug/Chemical/Small molecule objects ||mop_<br>[http://wiki.wormbase.org/index.php/Molecule#mop_tables mop_tables] ||acedb/karen/Molecule/dump_molecule_ace.pl<br>acedb/karen/Molecule/database.ace ||Paper<br> Chebi<br> || ||Karen Yook || |
|- | |- | ||
− | |movie<br>[http://wiki.wormbase.org/index.php/WormBase_Model:Movie model]||Movies||mov_ ||/home/acedb/draciti/oa_movie_ace_dumper use_movie_package.pl ||Paper<br> Expr_pattern<br> Variation<br> || ||Daniela Raciti || | + | |movie<br>[http://wiki.wormbase.org/index.php/WormBase_Model:Movie movie model]||Movies||mov_ ||/home/acedb/draciti/oa_movie_ace_dumper use_movie_package.pl ||Paper<br> Expr_pattern<br> Variation<br> || ||Daniela Raciti || |
|- | |- | ||
− | |phenotype<br>[http://wiki.wormbase.org/index.php/WormBase_Model:Phenotype_info model]||Annotation of phenotypes to variations, strains, rearrangements, transgenes||app_ <br> [http://wiki.wormbase.org/index.php/OA-phenotype#Phenotype_OA_postgres_tables app_tables]||acedb/work/allele_phenotype/use_package.pl<br><br>acedb/karen/phenote/paper_object/get_paper_object.pl ||Paper<br> Person<br> Variation<br> Rearrangements<br> Transgene<br> Gene<br> Phenotype<br> Molecule<br> Anatomy<br> Lifestage<br> Laboratory|| ||Karen Yook|| | + | |phenotype<br>[http://wiki.wormbase.org/index.php/WormBase_Model:Phenotype_info phenotype info model]||Annotation of phenotypes to variations, strains, rearrangements, transgenes||app_ <br> [http://wiki.wormbase.org/index.php/OA-phenotype#Phenotype_OA_postgres_tables app_tables]||acedb/work/allele_phenotype/use_package.pl<br><br>acedb/karen/phenote/paper_object/get_paper_object.pl ||Paper<br> Person<br> Variation<br> Rearrangements<br> Transgene<br> Gene<br> Phenotype<br> Molecule<br> Anatomy<br> Lifestage<br> Laboratory|| ||Karen Yook|| |
|- | |- | ||
− | |picture<br>[http://wiki.wormbase.org/index.php/WormBase_Model:Picture model]||Paper figure||pic_ ||/home/acedb/draciti/oa_picture_ace_dumper/dump_picture_ace.pl ||Paper<br> Person<br> Expr_pattern<br> Anatomy<br> GO<br> Lifestage<br> Cropped_from<br> || ||Daniela Raciti|| | + | |picture<br>[http://wiki.wormbase.org/index.php/WormBase_Model:Picture picture model]||Paper figure||pic_ ||/home/acedb/draciti/oa_picture_ace_dumper/dump_picture_ace.pl ||Paper<br> Person<br> Expr_pattern<br> Anatomy<br> GO<br> Lifestage<br> Cropped_from<br> || ||Daniela Raciti|| |
|- | |- | ||
− | |process<br>[http://wiki.wormbase.org/index.php/WS225_Models.wrm model(not updated)]||Process curation||pro_ <br>[http://wiki.wormbase.org/index.php/Overview_of_process_pages#Process_Curation_OA_.28pro_tables.29 pro_tables]||/home/acedb/karen/process/use_process_curation_package.pl ||Paper<br> Person<br> Phenotype<br> Gene<br> Molecule<br> Anatomy<br> Lifestage<br> Expression cluster<br> Taxon<br> Picture|| ||Karen Yook|| | + | |process<br>[http://wiki.wormbase.org/index.php/WS225_Models.wrm biological topic model (not updated)]||Process curation||pro_ <br>[http://wiki.wormbase.org/index.php/Overview_of_process_pages#Process_Curation_OA_.28pro_tables.29 pro_tables]||/home/acedb/karen/process/use_process_curation_package.pl ||Paper<br> Person<br> Phenotype<br> Gene<br> Molecule<br> Anatomy<br> Lifestage<br> Expression cluster<br> Taxon<br> Picture|| ||Karen Yook|| |
|- | |- | ||
− | |process term||Creation of process names||prt_ <br>[http://wiki.wormbase.org/index.php/Overview_of_process_pages#Process_Term_OA_.28prt_tables.29 prt_tables]||/home/acedb/karen/process/use_process_package.pl ||Paper<br>GO|| ||Karen Yook|| | + | |process term<br>[http://wiki.wormbase.org/index.php/WS225_Models.wrm model biological topic model (not updated)]||Creation of process names||prt_ <br>[http://wiki.wormbase.org/index.php/Overview_of_process_pages#Process_Term_OA_.28prt_tables.29 prt_tables]||/home/acedb/karen/process/use_process_package.pl ||Paper<br>GO|| ||Karen Yook|| |
|- | |- | ||
− | |[[RNAi|rnai]]||RNAi phenotype curation||rna_<br> [[RNAi#RNAi_OA|rna_tables]]||/home/postgres/work/citace_upload/rnai/use_package.pl ||Paper<br> Lifestage<br> Phenotype<br> Molecule<br> Person<br> Strain<br> Laboratory<br> PCR Product<br> ||/home/postgres/work/citace_upload/rnai/get_rnai_ace.pm<br> (Required Perl module) ||Chris Grove, Gary Schindelman, Wen Chen || Possible to have multiple PGIDs per WBRNAi object | + | |[[RNAi|rnai]]<br>[http://wiki.wormbase.org/index.php/WormBase_Model:RNAi RNAi model]||RNAi phenotype curation||rna_<br> [[RNAi#RNAi_OA|rna_tables]]||/home/postgres/work/citace_upload/rnai/use_package.pl ||Paper<br> Lifestage<br> Phenotype<br> Molecule<br> Person<br> Strain<br> Laboratory<br> PCR Product<br> ||/home/postgres/work/citace_upload/rnai/get_rnai_ace.pm<br> (Required Perl module) ||Chris Grove, Gary Schindelman, Wen Chen || Possible to have multiple PGIDs per WBRNAi object |
|- | |- | ||
− | |transgene ||Transgene object curation||trp_ <br> [https://github.com/kyook/wb-projects/wiki/Transgene-curation-oa trp_tables]||acedb/karen/transgene ./use_package.pl ||Gene<br> Paper<br> Laboratory<br> Person|| /postgres/work/pgpopulation/textpresso/transgene/update_textpreso_transgene.pl which makes http://textpresso-dev.caltech.edu/transgene/ <br><br> /home/citpub/Karen/TgSummary/getNewTg.pl parses results into trp_tables||Karen Yook || | + | |transgene<br>[http://wiki.wormbase.org/index.php/WormBase_Model:Transgene transgene model] ||Transgene object curation||trp_ <br> [https://github.com/kyook/wb-projects/wiki/Transgene-curation-oa trp_tables]||acedb/karen/transgene ./use_package.pl ||Gene<br> Paper<br> Laboratory<br> Person|| /postgres/work/pgpopulation/textpresso/transgene/update_textpreso_transgene.pl which makes http://textpresso-dev.caltech.edu/transgene/ <br><br> /home/citpub/Karen/TgSummary/getNewTg.pl parses results into trp_tables||Karen Yook || |
|} | |} | ||
Revision as of 23:15, 3 October 2013
OA form summaries
OA form | Curation focus | Postgres Tables | Dumper Script | Ontologies used | Other dependencies | Curator | Other remarks | |
antibody antibody model |
Antibody objects | abp_ | /home/acedb/xiaodong/antibody/use_package.pl | Paper Gene Laboratory |
Xiaodong Wang | |||
concise | Concise Description | con_ | /home/acedb/kimberly/citace_upload/concise/wrapper.pl and /home/postgres/work/citace_upload/concise/dump_concise.pl | n/a | n/a | Ranjana Kishore, Kimberly Van Auken | ||
disease | Worm models of human disease | dis_ | Ranjana Kishore | |||||
exprpat expression pattern model |
Expression pattern of genes | expr_ | /home/acedb/draciti/oa_expr_ace_dumper/use_package.pl | Paper Gene Anatomy GO Lifestage Type Transgene Antibody Clone Strain Laboratory |
Daniela Raciti | |||
gene class gene class model |
Concise description of gene classes | Gene Paper |
Karen Yook | |||||
go | Gene ontology annotation | Kimberly Van Auken, Ranjana Kishore | GO pipeline is currently in flux as we migrate to using Protein2GO | |||||
genereg gene regulation model |
Gene regulation | grg_ grg_tables |
/home/postgres/work/citace_upload/gene_regulation/use_package.pl | Paper Interaction RNAi Antibody Transgene Variation Rearrangement Expr_pattern Sentence Gene Molecule Sequence Anatomy Lifestage |
/home/postgres/work/citace_upload/gene_regulation/get_gene_regulation_ace.pm (Required Perl module) |
Xiaodong Wang | ||
interaction gene interaction model |
Genetic and physical interactions | int_ int_tables |
/home/postgres/work/citace_upload/interaction/use_package.pl | Paper Gene Variation Phenotype Person Laboratory Antibody Rearrangement Transgene RNAi |
/home/acedb/xiaodong/assigning_interaction_ids/assign_interaction_ids.pl Nightly cronjob script to assign Interaction IDs to PGIDs that do not already have one |
Chris Grove, Gary Schindelman, Kimberly Van Auken, Karen Yook | Only one PGID per Interaction object. Some physical interactions are currently in BioGrid and will need to be migrated to postgres. | |
molecule molecule model |
Drug/Chemical/Small molecule objects | mop_ mop_tables |
acedb/karen/Molecule/dump_molecule_ace.pl acedb/karen/Molecule/database.ace |
Paper Chebi |
Karen Yook | |||
movie movie model |
Movies | mov_ | /home/acedb/draciti/oa_movie_ace_dumper use_movie_package.pl | Paper Expr_pattern Variation |
Daniela Raciti | |||
phenotype phenotype info model |
Annotation of phenotypes to variations, strains, rearrangements, transgenes | app_ app_tables |
acedb/work/allele_phenotype/use_package.pl acedb/karen/phenote/paper_object/get_paper_object.pl |
Paper Person Variation Rearrangements Transgene Gene Phenotype Molecule Anatomy Lifestage Laboratory |
Karen Yook | |||
picture picture model |
Paper figure | pic_ | /home/acedb/draciti/oa_picture_ace_dumper/dump_picture_ace.pl | Paper Person Expr_pattern Anatomy GO Lifestage Cropped_from |
Daniela Raciti | |||
process biological topic model (not updated) |
Process curation | pro_ pro_tables |
/home/acedb/karen/process/use_process_curation_package.pl | Paper Person Phenotype Gene Molecule Anatomy Lifestage Expression cluster Taxon Picture |
Karen Yook | |||
process term model biological topic model (not updated) |
Creation of process names | prt_ prt_tables |
/home/acedb/karen/process/use_process_package.pl | Paper GO |
Karen Yook | |||
rnai RNAi model |
RNAi phenotype curation | rna_ rna_tables |
/home/postgres/work/citace_upload/rnai/use_package.pl | Paper Lifestage Phenotype Molecule Person Strain Laboratory PCR Product |
/home/postgres/work/citace_upload/rnai/get_rnai_ace.pm (Required Perl module) |
Chris Grove, Gary Schindelman, Wen Chen | Possible to have multiple PGIDs per WBRNAi object | |
transgene transgene model |
Transgene object curation | trp_ trp_tables |
acedb/karen/transgene ./use_package.pl | Gene Paper Laboratory Person |
/postgres/work/pgpopulation/textpresso/transgene/update_textpreso_transgene.pl which makes http://textpresso-dev.caltech.edu/transgene/ /home/citpub/Karen/TgSummary/getNewTg.pl parses results into trp_tables |
Karen Yook |
OA form ontology/autocomplete dependencies and update scripts
Any field within an OA that works by autocomplete is in a postgres table. Many of them are either obo tables or taken from other OA datatype tables. obo tables are obo_data_<datatype>, obo_syn_<datatype> or obo_name_<datatype>. Other OA datatype tables include trp_<tables>, mop_, grg_, abp_. Exceptions are person, paper, gene data as these are not curated through an OA.
Last updated | Ontology/Autocomplete | postres table | Source(s) | Updating scripts | Used in OA |
WBPaper | pap_tables (non OA) | NCBI pap_tables paper editor |
/home/postgres/work/pgpopulation/pap_papers/new_papers/pap_match.pm the paper editor uses this module to look at NCBI to populate pap_tables |
All | |
201309 | Gene | gin_tables (non OA) | genename server (for most info)/WS (for CDS etc) |
WBGene_information_and_status_pipeline | Most |
Person | two_tables (non OA) | cecilia person editor | manual for author, on-the-fly scripts for abstracts | Most | |
201309 | Variation object | obo_name_variation (WBVarID + public name) obo_syn_variation -delete |
variation name server minus junk variations (total_variations.txt -Variation_gene.txt, -dead variation, -gk(6+digits), -deBono alleles) | updateVariationObo addToVariationObo (routines in the generic.cgi) |
Phenotype GeneReg Interaction GO Movie |
201309 | Variation term_info | obo_data_variation | jolene/WS_AQL_queries/Variation_gene.txt (latest release for variation-gene mappings) Variation Name Server (immediate variation updates--no gene mappings |
generic.cgi?updateVariationObo | Phenotype GeneReg Interaction GO Movie |
GO | obo_name_goid and obo_syn_goid | http://www.geneontology.org/ontology/obo_format_1_2/gene_ontology_ext.obo | /postgres/work/pgpopulation/obo_oa_ontologies/update_obo_oa_ontologies.pl | Process GO Expression | |
Phenotype | phenotype_ontology_obo (from CVS on spica?) | /postgres/work/pgpopulation/obo_oa_ontologies/update_obo_oa_ontologies.pl | Phenotype Interaction Process | ||
Molecule | molecule.obo from mop tables? | Phenotype Process Gene regulation RNAi | |||
ChEBI | Molecule | ||||
Anatomy | https://github.com/raymond91125/Wao/raw/master/WBbt.obo | /postgres/work/pgpopulation/obo_oa_ontologies/update_obo_oa_ontologies.pl | Phenotype Process Expression | ||
Lifestage | https://raw.github.com/draciti/Life-stage-obo/master/worm_development.obo | /postgres/work/pgpopulation/obo_oa_ontologies/update_obo_oa_ontologies.pl | Phenotype Process Expression | ||
201309 | Expression cluster | /home/acedb/jolene/WS_AQL_queries/expr_cluster.txt manually queried from latest release | http://tazendra.caltech.edu/~azurebrd/cgi-bin/forms/generic.cgi?action=UpdateVariationObo? | Process | |
Taxon | /home/acedb/karen/processOA/wbspecies.txt (manually updated) | /home/acedb/karen/processOA/update_obo_taxon.pl | Process | ||
Picture | Process | ||||
2011? | Transgene | /home/acedb/jolene/WS_AQL_queries/transgene_summary.txt manual query of latest release for term info in OA changed to retrieve data from trp_tables |
http://tazendra.caltech.edu/~azurebrd/cgi-bin/forms/generic.cgi?action=UpdateVariationObo? | ||
201309 | Rearrangement object | /home/acedb/jolene/WS_AQL_queries/rearr_simple | http://tazendra.caltech.edu/~azurebrd/cgi-bin/forms/generic.cgi?action=UpdateVariationObo? | Phenotype Interaction | |
201309 | Rearrangement term info | /home/acedb/jolene/WS_AQL_queries/rearr_simple | http://tazendra.caltech.edu/~azurebrd/cgi-bin/forms/generic.cgi?action=UpdateVariationObo? | Phenotype Interaction | |
Process | prc tables | Interaction | |||
<2012 | Laboratory | obo_data_laboratory | /home/acedb/cron/populate_gin.pl | Transgene Expression pattern Interaction Phenotype /data1/Users/arunr/Curator_related/Alleles/scripts (for Mary Ann's alleles) | |
201309 | Clone object | /home/acedb/jolene/WS_AQL_queries/clone_info.txt manually queried from latest release | http://tazendra.caltech.edu/~azurebrd/cgi-bin/forms/generic.cgi?action=UpdateVariationObo? | Expression pattern Transgene | |
201309 | Clone term info | /home/acedb/jolene/WS_AQL_queries/clone_info.txt manually queried from latest release | http://tazendra.caltech.edu/~azurebrd/cgi-bin/forms/generic.cgi?action=UpdateVariationObo? | Expression pattern Transgene | |
201309 | Strain object | /home/acedb/jolene/WS_AQL_queries/strains.txt manually queried from latest release | http://tazendra.caltech.edu/~azurebrd/cgi-bin/forms/generic.cgi?action=UpdateVariationObo? | Expression pattern Phenotype | |
201309 | Strain term info | /home/acedb/jolene/WS_AQL_queries/strains.txt manually queried from latest release | http://tazendra.caltech.edu/~azurebrd/cgi-bin/forms/generic.cgi?action=UpdateVariationObo? | Expression pattern Phenotype | |
201309 | Expression_cluster | /home/acedb/jolene/WS_AQL_queries/strains.txt manually queried from latest release change to get from spica /home/citpub/CitaceMirror/citace/ after each upload |
http://tazendra.caltech.edu/~azurebrd/cgi-bin/forms/generic.cgi?action=UpdateVariationObo? | Process_curation | |
Chebi | ftp://ftp.ebi.ac.uk/pub/databases/chebi/ontology/chebi.obo | /postgres/work/pgpopulation/obo_oa_ontologies/update_obo_oa_ontologies.pl | Molecule | ||
Human Disease DO (humando) | https://diseaseontology.svn.sourceforge.net/svnroot/diseaseontology/trunk/HumanDO.obo | /postgres/work/pgpopulation/obo_oa_ontologies/update_obo_oa_ontologies.pl | Human disease |
OA form dropdown lists
These are the values associated with the dropdown lists in the fields of the OAs. These values are all hardcoded in the wormOA.pm on tazendra.
Last updated | OA | postgres table | Values (id - name) |
ALL | <OA_table>_curator | two1823 - Juancarlos Chan two101 - Wen Chen two1983 - Paul Davis two2021 - Jolene S. Fernandes two2987 - Chris two12884 - Snehalata Kadam two324 - Ranjana Kishore two363 - Raymond Lee two1 - Cecilia Nakamura two480 - Tuco two12028 - Daniela Raciti two1847 - Anthony Rogers two557 - Gary C. Schindelman two567 - Erich Schwarz two625 - Paul Sternberg two2970 - Mary Ann Tuli two1843 - Kimberly Van Auken two736 - Qinghua Wang two1760 - Xiaodong Wang two712 - Karen Yook | |
Interaction | int_otheronetype int_othertwotype |
Chemical Transgene |
Back to Caltech documentation