WormBase-Caltech Weekly Calls
From WormBaseWiki
Previous Years
2013 Meetings
October 3, 2013
Development environment for Raymond
- Todd is working on it; will do today
NAR Manuscript
- Todd will send around for comments today
WormBase Ontology Browser (WOBr)
- We have a stable server for the information the browser queries: gene ontology associations, gene association files
- Raymond was trying to keep up with the AMIGO 2 development upgrades
- Raymond will soon be getting other ontology info into the browser
- Takes about an hour to load data into the browser
Movie objects stored as URLs
- There are 209 RNAi objects referencing 513 movies via URLs
- The URLs are for RNAi.org pages that have the movies; we don't have the movie files themselves
- Daniela will add a Database tag to the ?Movie class
- URL suffixes/endings will act as the RNAi.org Accession number that will go into the respective Movie objects
Movie curation
- Movie files are stored on Canopus
- Anyone importing new movies will need to get their movies into the appropriate directories on Canopus
- Currently movie files are all from three large scale movie datasets, so names are currently unique
- Daniela will now sort movies according to WBPaper ID or WBPerson ID (depending on the source) and place them in directories accordingly
- Movie files will then be organized according to these directories as ?Picture objects are already
