WormBase-Caltech Weekly Calls
From WormBaseWiki
2013 Meetings
July 11, 2013
Geneace daily dump
- EBI is moving nameserver location
- Getting real-time updates of gene list for genes in OA
- Michael Paulini set up nightly geneace dumps to FTP site
- We have gene file from nameserver: names, live/dead status, gene IDs
- What data do we want additionally?
Spica has officially been moved to new machine
- Let Raymond know of any problems
- Would be good to track all accounts on Spica (and any other machine)
- Can use log of all user logins
AMIGO 2 still moving forward
- AMIGO 2 might go live July 17th
Process Pages/WikiPathways
- iFrame window doesn't work/load on Firefox; they are working on it
- iFrame window interactive display somewhat problematic
- Discussing Cytoscape as alternative?
- Using Cytoscape to display pathways would require significant development
- Some app available to load GPML from WikiPathways into Cytoscape, but JD couldn't get it working (yet)