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• Managing Perl libraries across nodes
  ...ely with new libraries), I am now including required perl modules with the WormBase software. This includes modules for both different versions of Perl and dif ...directory is automatically mirrored into the staging directory (/usr/local/wormbase-production), and from there distributed to production nodes as necessary.
  5 KB (819 words) - 17:37, 16 August 2010
• WBConfCall 2023.06.15-Agenda and Minutes
  Dear Dr. Kishore, Harris, Cain, Raciti, van Auken and all Wormbase staff, Given your expertise at Wormbase, your perspective would be extremely valuable. I am therefore warmly inviti
  4 KB (657 words) - 17:19, 15 June 2023
• Linking To WormBase
  It is easy to link to WormBase. You can link to HTML pages, text-only dumps, images, and XML pages. All objects in WormBase have a '''name''' and a '''class'''. The name is a unique identifier which
  6 KB (1,087 words) - 15:07, 19 June 2014
• How to build a WormBase Virtual Machine
  WormBase Virtual Machines are created for each release of the database. This proces To simplify the download and update process, WormBase virtual machines are split into modules. The primary virtual machine conta
  5 KB (752 words) - 23:33, 13 August 2010
• Software Life Cycle: 1. Updating The Development Server
  '''THIS DOCUMENT IS NOW DEPRECATED. PLEASE REFER TO THE PROJECT DOCUMENTATION MAINTAINED ON GOOGLE DRIVE.''' https://docs.google.com/a/wormbase.org/document/d/1oPpj8d5gibUc-gpUZorl6ETT5baE6mp-v2bMedKauiA/edit#
  25 KB (3,632 words) - 03:11, 28 October 2013
• WormCloud:Overview
  ...e in order to reduce complexity and increase functionality. In the end the WormBase architecture should be significantly more robust, take less effort to maint To use Datomic/DynamoDB as a centralized database system for the WormBase project
  5 KB (842 words) - 19:41, 17 February 2016
• 2016 Advisory Board Meeting
  The 2016 edition of the WormBase Scientific Advisory Board meeting will take place at Caltech on 4/5 Feb 201 ...ology.ucsd.edu/research/faculty/adchisholm Andrew Chisholm], [http://blog.wormbase.org/2015/12/18/call-for-nominations-for-a-worm-board WormBoard]
  8 KB (1,130 words) - 13:27, 4 February 2016
• Building Squid
  ...rimary front end caching server (web-web1.wormbase.org/fe.wormbase.org) at WormBase. This server runs the Squid Reverse Proxy server. = Checkout the wormbase-admin module =
  20 KB (2,994 words) - 16:05, 23 August 2010
• Ontology Annotator
  The Ontology Annotator (OA) is a curation tool developed by WormBase for a variety of curation purposes including the curation of phenotypes, at List of WormBase OA configurations:
  20 KB (3,124 words) - 19:59, 19 February 2020
• Managing Perl Libraries
  # to set up our local WormBase CPAN local: /usr/local/wormbase/minicpan
  6 KB (868 words) - 18:47, 13 April 2015
• WormBase-Caltech Weekly Calls December 2011
  WormBase meeting announcement *Arun will prepare documentation
  6 KB (903 words) - 16:37, 5 January 2012
• Building WormMart
  WormMart is WormBase's implementation of the [http://www,biomart.org BioMart] data warehouse. In simple terms, WormMart is built by transforming WormBase's AceDB database into a BioMart schema MySQL database. Standard BioMart too
  6 KB (786 words) - 19:13, 18 June 2014
• Disease and Drugs
  Human disease relevance descriptions were introduced in late 2011, on the WormBase gene page, to serve both the worm researcher and the biomedical researcher '''Examples of automated descriptions based on OMIM orthology that existed in WormBase prior to 2012:
  5 KB (782 words) - 20:56, 8 January 2020
• Specifications for WB gpi file
  We will need to create a tab-delimited gpi file with each WormBase release. These specifications are based, in part, on the documentation on the GOC's go-annotation github repository:
  5 KB (720 words) - 20:46, 10 October 2016
• Contributing Phenotype Connections
  The following documentation explains the use and backend for the Phenotype form found here: https://wormbase.org//submissions/phenotype.cgi
  26 KB (4,016 words) - 21:32, 8 April 2020
• AceOjbect Redesign Page
  ...ndex of available Ace classses; see the [https://spreadsheets.google.com/a/wormbase.org/ccc?key=tygSYCz49YW5hyCcYMHUZ1Q#gid=2 Google Doc] for migration status. |[[WormBase Model:2_point_data|2_point_data]]
  12 KB (1,559 words) - 18:14, 15 June 2011
• WebDev 2013.06.03-Agenda and Minutes
  ** documentation on web * WormBase/website-mobile on github
  3 KB (420 words) - 15:52, 7 June 2013
• Contributing Allele Phenotype Connections
  The following documentation explains the use and backend for the Allele-Phenotype form found here: ...le-Phenotype" option under the "Submit data" menu header at the top of the WormBase homepage:
  15 KB (2,325 words) - 23:32, 21 December 2015
• TAIR
  ===From WormBase documentation:===
  14 KB (2,091 words) - 16:28, 9 December 2010
• Design Specs: Database Connectivity
  Part of the WormBase::API. Needs to be able to connect to multiple http://bitbucket.org/tharris/wormbase/src/tip/lib/WormBase/API/Role/Service.pm
  6 KB (980 words) - 18:48, 11 August 2010

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