Difference between revisions of "WormBase-Caltech Weekly Calls"
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*You still have to register (it's free), if you hadn't before | *You still have to register (it's free), if you hadn't before | ||
https://genetics-gsa.org/tagc-2020/registration/ | https://genetics-gsa.org/tagc-2020/registration/ | ||
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| + | ===summer students??=== | ||
Revision as of 18:02, 9 April 2020
Contents
Previous Years
GoToMeeting link: https://www.gotomeet.me/wormbase1
2020 Meetings
April 2, 2020
Community phenotype requests
- March 9-28
- 2,548 emails went out; 89 bounced; 6 resent; 13 backup; 2,478 successful emails
- 361 annotations overall
- 48 papers requested received curation (2% response rate)
- 53 distinct papers overall (5 papers without request)
- 53 distinct persons overall
Community curation volunteers
- Tracking volunteers here
- 14 volunteers so far, all have been assigned a WBPerson ID
- Chris will set up a webinar tutorial in the coming week or two
AFP pipeline
- Will resend email requests to authors that haven't already responded
- May also send out for older papers
- May work with people to help
- Does the old AFP form still work? It should
- If someone has a link to the old form, they won't get one for the new form
- Maybe could set up an automatic redirect from the old form to the new form
- Received many submissions recently (>20% response rate)
Ontology Annotator
- Need to work on Genotype OA dumper
- Turns out semicolons are problematic (currently in genotypes and transgenes) for object names (ontology fields)
- Ampersands (&) are also problematic for object names in the OA
- 20237 | Is[Pgcy-5::daf-2a::venus; Punc-122::mCherry] | 2014-10-08 10:32:45.874519-07
- 20239 | Ex[Pgcy-5::casy-1::venus; Pgcy-5::aman-2::mCherry; Punc-122::mCherry] | 2014-10-08 10:45:23.202362-07
- 20238 | Is[Pgcy-5::daf-2c::venus; Punc-122::mCherry] | 2014-10-08 10:38:19.859078-07
- 25249 | Ex[Prheb-1::rheb-1::GFP; unc-119(+] | 2018-06-29 10:16:40.784295-07
- 16283 | [hlh-13::GFP;unc-119(+)] | 2013-02-07 17:43:22.384819-08
- 26131 | Ex[pedc-3EDC-3::DsRed;pRF4] | 2019-08-14 08:44:49.91063-07
Use Slack More
- Slack is a good tool for quick communication among team members; would be good for all curators to join Slack to enable efficient communication
April 9, 2020
Volunteer curators
- Have sent out emails to schedule tutorials
- Chris had one tutorial with Michael Davies (Alyson Ashe's lab) yesterday
- One already scheduled for next Monday with Wilber and Stephanie from Paul's lab
- Two others already scheduled for next Tuesday with Lina Dahlberg and Colin Dolphin
TAGC is virtual (4.22-25.2020)
FYI in case you missed it
- You still have to register (it's free), if you hadn't before
https://genetics-gsa.org/tagc-2020/registration/
