Difference between revisions of "WBConfCall 2017-11-16-Agenda and Minutes"
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** Michael P - Something about PantherDB. (the source of the problematic data is PantherDB) | ** Michael P - Something about PantherDB. (the source of the problematic data is PantherDB) | ||
** Chris / Jae - Sequence similarity calls, and orthology calls by other methods. Can we take all things into account when displaying orthologs in AGR or WormBase. | ** Chris / Jae - Sequence similarity calls, and orthology calls by other methods. Can we take all things into account when displaying orthologs in AGR or WormBase. | ||
| − | ** Michael P - We show all connections (in WormBase). | + | ** Michael P - We show all connections (in WormBase. Including any curated ones from user submissions and papers). |
** Raymond - Not about automated predictions, about manual connections of functional homologs, not picked up by automated mechanisms. | ** Raymond - Not about automated predictions, about manual connections of functional homologs, not picked up by automated mechanisms. | ||
** Paul S - Functional data is not orthology. | ** Paul S - Functional data is not orthology. | ||
Latest revision as of 16:10, 17 November 2017
Agenda
Outstanding Help Desk
- https://github.com/WormBase/website/issues/5977
- Submitted 2 assembled genomes + annotations to NCBI (C. latens/PX534 and C.remanei/PX439
- would like to add the 2 new assemblies to WormBase and update the C.remanei/PX356 assembly & annotation to the new set.
Minutes
- Orthology.
- Michael P - Something about PantherDB. (the source of the problematic data is PantherDB)
- Chris / Jae - Sequence similarity calls, and orthology calls by other methods. Can we take all things into account when displaying orthologs in AGR or WormBase.
- Michael P - We show all connections (in WormBase. Including any curated ones from user submissions and papers).
- Raymond - Not about automated predictions, about manual connections of functional homologs, not picked up by automated mechanisms.
- Paul S - Functional data is not orthology.
- Chris - AGR working on help desk pipeline.
- Raymond - Caltech scrambling for model changes recently. There was discussion on github, but Caltech didn't know, how does Caltech subscribe to these discussions ?
- Matt R - Started like a simple issue, but grew more complicated.
- Chris - Can we use the models mailing list ?
- Todd - github should post to slack, maybe have discussion there.
- Raymond - Caltech doesn't use slack much, prefers email. Can we do email ?
- Todd - Will look into it.
- Raymond - If that doesn't work, can we centralize into a single place to subscribe to.
- Paul D - Curators shouldn't need to keep track of all github, can send an email when appropriate.
- Raymond - Issue came from not understanding acedb modeling for datomic conversion.
- Matt R - Discovering things as we go along, can make document of best practices for the future.
