Difference between revisions of "WormBase-Caltech Weekly Calls"
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** If so, can it wait until we have proper persons ? | ** If so, can it wait until we have proper persons ? | ||
** If not, when we have persons later will the data be reconnected to Person objects ? | ** If not, when we have persons later will the data be reconnected to Person objects ? | ||
+ | * Where does data come from, which we call Person_evidence ? Some forms ? Direct emails ? Other sources ? | ||
+ | * Can we create Paper objects for the actual emails or other forms of communication (figure out details of when and what requirements), but keep Person_evidence for form submissions ? | ||
= June 30, 2022 = | = June 30, 2022 = |
Revision as of 17:28, 8 July 2022
Contents
Previous Years
2022 Meetings
July 14th, 2022
Reference and Person Evidence
- We need to know how best to move forward with ?Reference and ?Person evidence in the context of data exchange between WB and the Alliance
- Does A-team need to connect those WB Persons to be able to populate data in the Alliance curation db ?
- If so, can it wait until we have proper persons ?
- If not, when we have persons later will the data be reconnected to Person objects ?
- Where does data come from, which we call Person_evidence ? Some forms ? Direct emails ? Other sources ?
- Can we create Paper objects for the actual emails or other forms of communication (figure out details of when and what requirements), but keep Person_evidence for form submissions ?
June 30, 2022
June 23, 2022
Helpdesk tickets
SOba in Alliance
GCBR application due 8th Aug
Prepare for grant; nice pics for metrics eg https://pharos.nih.gov
Should Alliance gene & allele model have Clone/Sequence name as an attribute?
May 26, 2022
WormBase user survey
May 12, 2022
Subcellular localization field
- WB has 2 separate free text fields to capture anatomical and subcellular localization statements but obviously the boundaries are fuzzy, see the example below where the statement belongs to both- there are many examples.
“miR-228 is expressed in the germline and preferentially localizes to the nuclear periphery.”
- Other MODs do not make such distinction.
- Daniela is asking the group advice to see if there is any objection in merging the 2 fields and slot the paragraph descriptions in the ExpressionExperimentStatement in LinkML.
- Decision: Keep just one field that will take care of both anatomical expression and subcellular localization
ExpressionExperimentStatement: is_a: EntityStatement description: >- Free-text describing some aspect(s) of a gene's expression, particularly nuanced information that is not readily captured in annotations. This statement's scope is limited to the associated ExpressionExperiment. notes: >- Inherits: statement_subject, statement_type, statement_text, references. slot_usage: statement_subject: range: ExpressionExperiment