Difference between revisions of "WormBase-Caltech Weekly Calls"
From WormBaseWiki
Jump to navigationJump to searchMzarowiecki (talk | contribs) |
Mzarowiecki (talk | contribs) |
||
Line 40: | Line 40: | ||
= May 26, 2022 = | = May 26, 2022 = | ||
− | + | WormBase user survey | |
Revision as of 21:46, 24 May 2022
Contents
Previous Years
2022 Meetings
May 26, 2022
WormBase user survey
May 12, 2022
Subcellular localization field
- WB has 2 separate free text fields to capture anatomical and subcellular localization statements but obviously the boundaries are fuzzy, see the example below where the statement belongs to both- there are many examples.
“miR-228 is expressed in the germline and preferentially localizes to the nuclear periphery.”
- Other MODs do not make such distinction.
- Daniela is asking the group advice to see if there is any objection in merging the 2 fields and slot the paragraph descriptions in the ExpressionExperimentStatement in LinkML.
- Decision: Keep just one field that will take care of both anatomical expression and subcellular localization
ExpressionExperimentStatement: is_a: EntityStatement description: >- Free-text describing some aspect(s) of a gene's expression, particularly nuanced information that is not readily captured in annotations. This statement's scope is limited to the associated ExpressionExperiment. notes: >- Inherits: statement_subject, statement_type, statement_text, references. slot_usage: statement_subject: range: ExpressionExperiment