WormBase-Caltech Weekly Calls

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2014 Meetings

January 9, 2014

AGENDA

• Apologies from Mary Ann - in Strasboug. Might try and Skype in. - Mary Ann joined in at the end of the call.
• Curation of protein complexes - will wait until Chris can join in.
• Set up a time next week to go over what more needs to be done for the construct/variation/transgene class - Main people being Mary Ann, Daniela, Chris, and Karen, others are welcome. Visit the construct model requests here
• Raymond gave an update on WObr. Juancarlos has learned enough Catalyst to create a workable ontology browser on the caltech wormbase sandbox.
  • The browser can accommodate all ontologies used by Caltech curators (all GO, Phenotype, Anatomy, Life Stage, Disease)
  • A browser will be on each respective ontology page;
    • direct and indirect gene connections will be displayed in a list format
    • there was a request that the gene connections to ontology terms display the indirect annotations with direct annotations in parenths
  • various ontology browsers can be in their own widgets where desired.
  • still need to set up the search function from the main wb search
• Caltech Models due Thursday 16 January 2014
• Caltech WS242 data due into Citace by Tuesday Jan 28.
• Biocuration 2014
  • http://biocuration2014.events.oicr.on.ca/biocuration
  • M. Tuli, X. Wang interested in attending.

January 16, 2014

AGENDA

• WOBr discussion
• Author-person issues
• Timeline for construct model
• Topic Curation

Author/Person issues

• User was looking for papers for a specific person
• Person was an author, but did not have a WBPerson object
• Cecilia will contact user
• Make author names searchable? ~32,000 authors without a person object