Difference between revisions of "WormBase-Caltech Weekly Calls"
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*Gene IDs can be found from original paper or data set | *Gene IDs can be found from original paper or data set | ||
*Up-to-date mapping to genes is not currently done | *Up-to-date mapping to genes is not currently done | ||
| + | |||
| + | |||
| + | AMIGO (WOBr) | ||
| + | *Raymond and Juancarlos have taken AMIGO2 infrastructure to make an ontology browser for integration into WormBase | ||
| + | *Solr back | ||
Paper Categorization | Paper Categorization | ||
*Word frequency | *Word frequency | ||
| − | * | + | **We chose papers from the Author First Pass list with 'stress' |
** | ** | ||
| + | *Paper pages on WormBase | ||
| + | **Todd suggest: show a table of flagged data types? | ||
Revision as of 17:15, 1 August 2013
2013 Meetings
August 1, 2013
Quarterly Progress Reports
- Capturing curation stats from the Curation Status form
- What data types do we want to capture that we are not currently?
- We have frequent database dumps that can be read for stats
- We can capture the stats table statically on a regular basis (daily?)
RNA-Seq and Tiling Array data
- Data in SPELL
- Wen found a lot more non modENCODE data sets
- May use SVM for expression cluster data
- Gene IDs can be found from original paper or data set
- Up-to-date mapping to genes is not currently done
AMIGO (WOBr)
- Raymond and Juancarlos have taken AMIGO2 infrastructure to make an ontology browser for integration into WormBase
- Solr back
Paper Categorization
- Word frequency
- We chose papers from the Author First Pass list with 'stress'
- Paper pages on WormBase
- Todd suggest: show a table of flagged data types?
