Difference between revisions of "WormBase-Caltech Weekly Calls"
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*Having all process-related interactions in an Interactions widget on Process Pages | *Having all process-related interactions in an Interactions widget on Process Pages | ||
**Users need a clearer legend explaining what the different edges mean | **Users need a clearer legend explaining what the different edges mean | ||
| − | **We need to modify some edges (e.g. flat ends do not mean repression) | + | **We need to modify some edges (e.g. flat ends do not mean repression; maybe they should) |
Author First Pass Forms | Author First Pass Forms | ||
*Currently we collect data from authors that we may not have intention of curating (at least right away) | *Currently we collect data from authors that we may not have intention of curating (at least right away) | ||
Revision as of 18:39, 11 July 2013
2013 Meetings
July 11, 2013
Geneace daily dump
- EBI is moving nameserver location
- Getting real-time updates of gene list for genes in OA
- Michael Paulini set up nightly geneace dumps to FTP site
- We have gene file from nameserver: names, live/dead status, gene IDs
- What data do we want additionally?
Spica has officially been moved to new machine
- Let Raymond know of any problems
- Would be good to track all accounts on Spica (and any other machine)
- Can use log of all user logins
AMIGO 2 still moving forward
- AMIGO 2 might go live July 17th
Process Pages/WikiPathways
- iFrame window doesn't work/load on Firefox; they are working on it
- iFrame window interactive display somewhat problematic
- Discussing Cytoscape as alternative?
- Using Cytoscape to display pathways would require significant development
- Some app available to load GPML from WikiPathways into Cytoscape, but JD couldn't get it working (yet)
- Having all process-related interactions in an Interactions widget on Process Pages
- Users need a clearer legend explaining what the different edges mean
- We need to modify some edges (e.g. flat ends do not mean repression; maybe they should)
Author First Pass Forms
- Currently we collect data from authors that we may not have intention of curating (at least right away)
