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• Paper Pipeline Scripts
  2 KB (320 words) - 20:59, 12 May 2017
• Annotation of Disease scripts
  10 KB (1,461 words) - 23:06, 27 February 2017
• OA forms, tables, scripts, etc
  ==OA form ontology/autocomplete dependencies and update scripts== ...ntology/Autocomplete'''||'''postres table'''||'''Source(s)'''||'''Updating scripts'''||'''Used in OA'''
  20 KB (3,050 words) - 21:01, 19 April 2017
• OA forms, tables, scripts, etc.
  #REDIRECT [[OA forms, tables, scripts, etc]]
  44 bytes (6 words) - 22:29, 1 February 2013
• Documentation for workflow and scripts
  All scripts at: Run all scripts using 'sudo' in the above directory
  15 KB (2,321 words) - 17:36, 18 August 2017
• OA and scripts for disease data
  --All scripts are under: /home/acedb/ranjana/human_disease ...location has changed, need to alert JC to change the locations for OA and scripts (done, 08.08.2013):
  36 KB (4,595 words) - 18:10, 15 March 2023
• Scripts for file dumping and conversion
  539 bytes (84 words) - 19:05, 25 January 2013
• Detailed Documentation of Form and Scripts
  Currently, on mangolassi the ccc.cgi and other scripts and files are here: *scripts
  5 KB (817 words) - 15:11, 18 February 2014
• Understand the pipeline by looking at all scripts and forms
  =List of scripts and forms to talk about= Associated scripts: script that checks PubMed daily for new papers
  4 KB (536 words) - 20:31, 25 April 2011

Page text matches

• WBConfCall 2022.08.04-Agenda and Minutes
  ** WB pipeline/scripts to generate jbrowse intron tracks ***Scott to point out scripts for processing intron RNASeq data:
  1 KB (182 words) - 15:49, 4 August 2022
• Understand the pipeline by looking at all scripts and forms
  =List of scripts and forms to talk about= Associated scripts: script that checks PubMed daily for new papers
  4 KB (536 words) - 20:31, 25 April 2011
• Paper Pipeline To Do - May 2011
  #[[Understand the pipeline by looking at all scripts and forms]]
  388 bytes (49 words) - 20:02, 15 April 2011
• International C. elegans Meetings - UCLA
  =Parsing Scripts= *There are two scripts that we run for processing the abstracts:
  3 KB (532 words) - 13:33, 31 March 2022
• Mining AceDB/WormBase with AcePerl
  ...he command line using AcePerl. This allows you to write sophisticated Perl scripts to mine WormBase. For details, see the [http://stein.cshl.org/AcePerl/ AceP
  711 bytes (108 words) - 11:13, 5 January 2011
• GSA Markup Meeting Notes
  ...GSA linking development site that will be used for developing and testing scripts without impacting the live linking pipelines already in place. ...rly will do manual linking of the abstracts in parallel with the automated scripts recording the time it takes to do the various; while doing this she will al
  2 KB (361 words) - 23:31, 11 January 2011
• Populating Species Tag
  ==Scripts on Mangolassi==
  525 bytes (60 words) - 15:34, 17 May 2016
• Updating WormMart
  $ cd $HOME/mart-build/scripts/wormbase-mart $ cd $HOME/mart-build/scripts/wormbase-mart/wormmart_WS195_meta_tables
  2 KB (289 words) - 18:24, 17 August 2010
• GFF3 Validation
  ...and-line version of the validator, make this module available to your Perl scripts (add to @INC path by using PERL5LIB, installing globally, etc.) and use the ...lidator, make both GFF3::Validator and GFF3::Online available to your Perl scripts. Install the validate_gff3_online script into Apache's CGI script directory
  3 KB (422 words) - 23:12, 13 August 2010
• WebDev 2010.02.17-Agenda and Minutes
  * scripts under development
  907 bytes (113 words) - 14:27, 19 February 2010
• Paper Pipeline
  #[[Paper Pipeline Scripts]]
  1 KB (130 words) - 21:21, 15 March 2021
• WormBase-Caltech Weekly Calls April 2013
  *Table maker vs Scripts? *Chris will work with Juancarlos to sort out OA dumping scripts for Gene_regulation and Interaction OAs
  4 KB (651 words) - 16:11, 2 May 2013
• WormBase-Caltech Weekly Calls May 2012
  ...ded directly by curator vs. what was populated automatically (e.g. mapping scripts) *We should archive all data-processing scripts in GitHub
  4 KB (695 words) - 15:26, 7 June 2012
• Disease and Drugs
  ==OA and scripts for disease data== [[OA and scripts for disease data]]
  5 KB (782 words) - 20:56, 8 January 2020
• WBConfCall 2013.02.21-Agenda and Minutes
  * Ranjana brought up thet the Cele_ prefix was breaking few scripts here at Caltech. Those are NCBI locus tag prefixes, they are listed as othe
  929 bytes (147 words) - 19:14, 21 February 2013
• Converting Coordinates between releases
  ...remap.tar.bz2 remap.tar.bz2] contains all of the data files as well as the scripts etc.
  1 KB (194 words) - 12:46, 29 June 2021
• Documentation for workflow and scripts
  All scripts at: Run all scripts using 'sudo' in the above directory
  15 KB (2,321 words) - 17:36, 18 August 2017
• Coding standards
  Scripts must be named according to the function they carry out. ...suffix that denotes their type (BASH scripts: .sh, Perl scripts: .pl, Ruby scripts: .rb).
  6 KB (950 words) - 15:36, 19 June 2014
• CCC Workflow
  **When new sources files are available, scripts will run to generate and populate the tables needed for the curation form.
  1 KB (201 words) - 20:17, 29 August 2013
• WebDev 2014.08.05-Agenda and Minutes
  * Write scripts to automate data extraction for existing tracks.
  1 KB (158 words) - 13:51, 5 August 2014

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