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• Allele-sequence micropublications
  ==Allele-sequence micropublications== we can reuse the allele-sequence submission form
  2 KB (369 words) - 17:10, 25 May 2017
• (11 papers)
  ! Allele - Location (Distance from start ATG in base pairs) - Mutation - Consequence ...s a 1bp deletion and causes a frameshift in exon 3. egl-9(ia60) is a MOS1 insertion in exon 3. egl-9(ia61) is a 5bp duplication and a nearby point mutation in
  3 KB (521 words) - 18:57, 10 August 2010
• WormBase Newsletter No. 4, February 2004
  == Mos-derived transposon insertion data in WormBase == ...Laurent Segalat are now available on the Genome Browser and on individual Allele pages.
  6 KB (914 words) - 15:39, 24 September 2007
• Development notes WS173
  ...e "NemaGENETAG_Consortium" Description "NemaGENETAG Consortium. Transposon insertion project." URL "http:\/\/elegans.imbb.forth.gr\/nemagenetag\/" Email "tavern ...to displayed on the web in the same way as the KO (gk-, ok-) and NBP (tm-) allele DB_info tags.
  858 bytes (129 words) - 18:52, 11 August 2010
• GFF2 features
  | ALLELE:. | complex_change_in_nucleotide_sequence:Allele
  5 KB (650 words) - 23:11, 13 August 2010
• WormBase Model:Variation
  Sequence_details SMap S_parent UNIQUE Sequence UNIQUE ?Sequence XREF Allele Insertion UNIQUE Text #Evidence
  8 KB (853 words) - 23:50, 16 April 2014
• GFF3 features (C. elegans)
  SNP:Allele (rflp,status,variation) complex_substitution:Allele (variation)
  19 KB (1,985 words) - 23:13, 13 August 2010
• WormBase-Caltech Weekly Calls January 2020
  * We have the allele-sequence form; where does it go? Hinxton * Need to get allele/variation data in an Alliance-submission friendly form and pull it into the
  7 KB (989 words) - 16:08, 5 February 2020
• UserGuide:SimpleMine
  Allele Phenotype Observed: Display the phenotype ontology names sorted in case-ins ...alphabetical order. Each allele entry contains three bar-separated fields: allele name, molecular change, and protein effect.
  6 KB (847 words) - 23:51, 9 May 2023
• Suggested pre-release data checks
  <br /> DESC "Deletion and insertion alleles" QUERY 'find Variation flanking_sequences AND method = "Allele"'
  7 KB (659 words) - 17:39, 17 August 2010
• WormBase Model:Construct
  ...ation XREF Corresponding_transgene //put in to unambiguously associate the allele/transgene An engineered insertion of GFP plus the unc-119(+) selectable marker, flanked by loxP sites.
  20 KB (2,339 words) - 18:04, 23 September 2015
• UserGuide:Revised Nomenclature
  ...span></p><h3> How to Register a New Laboratory and Receive Lab, Strain and Allele designations </h3><p> assigned a lab/strain code, for naming strains, and an allele code,
  56 KB (9,514 words) - 09:48, 23 October 2015
• UserGuide:Reivsed Nomenclature
  ...span></p><h3> How to Register a New Laboratory and Receive Lab, Strain and Allele designations </h3><p> assigned a lab/strain code, for naming strains, and an allele code,
  56 KB (9,520 words) - 11:51, 21 October 2015
• WormBase-Caltech Weekly Calls August 2017
  ** Could maybe use endogenous sequence near insertion site (not ideal, for off-target effects) * Mitani has submitted some for allele-phenotype and sequence change; we will not store the raw data for the seque
  6 KB (912 words) - 01:40, 15 September 2017
• WormBase-Caltech Weekly Calls February 2014
  ...ue insertion site in the genome) for any transgene, it will also become an allele (?Variation) object
  10 KB (1,485 words) - 18:08, 5 March 2014
• WormBase-Caltech Weekly Calls October 2013
  ...n patterns for the "alleles"/"transgenes" resulting from, for example, GFP insertion events * Need a way to modify the allele curation to be able to handle complex insertions (carrying construct info)
  13 KB (1,983 words) - 16:40, 7 November 2013
• FAQs
  ...directly submitted data from users at a very small level, e.g. individual allele submissions. New lab and allele designation should be registered directly with Jonathan Hodgkin (jah@bioch.
  67 KB (10,954 words) - 09:22, 19 February 2013
• WormBase-Caltech Weekly Calls 2023
  ...Sequence_details SMap S_parent UNIQUE Sequence UNIQUE ?Sequence XREF Allele Insertion UNIQUE Text #Evidence
  36 KB (4,994 words) - 17:27, 14 February 2024
• Unused Attributes
  | :locus/transposon-insertion | :variation/engineered-allele
  35 KB (4,174 words) - 10:52, 2 February 2015
• WS244 Models.wrm
  < Allele UNIQUE ?Variation XREF Multi_point UNIQUE Int #Multi_counts > Allele UNIQUE ?Variation XREF Multi_point UNIQUE Int #Multi_counts
  235 KB (23,325 words) - 10:33, 3 July 2014