Difference between revisions of "Species available through WormBase (overview)"
From WormBaseWiki
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|[[Caenorhabditis brenneri|''Caenorhabditis brenneri'']] | |[[Caenorhabditis brenneri|''Caenorhabditis brenneri'']] | ||
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− | | | + | | genomic, proteins |
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|[[Caenorhabditis remanei|''Caenorhabditis remanei'']] | |[[Caenorhabditis remanei|''Caenorhabditis remanei'']] | ||
| [http://www.wormbase.org/db/seq/gbrowse/c_remanei]<br> - includes nGASP predictions | | [http://www.wormbase.org/db/seq/gbrowse/c_remanei]<br> - includes nGASP predictions | ||
− | | genomic | + | | genomic, proteins |
− | | | + | | |
| [http://www.wormbase.org/db/gene/gene?name=WBGene00063512 Gene Summary] | | [http://www.wormbase.org/db/gene/gene?name=WBGene00063512 Gene Summary] | ||
| [http://www.wormbase.org/db/seq/sequence?name=CRE02979;class=Gene_name Sequence Summary] <br> -error probably with inline image | | [http://www.wormbase.org/db/seq/sequence?name=CRE02979;class=Gene_name Sequence Summary] <br> -error probably with inline image | ||
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| [[Meloidogyne hapla|''Meloidogyne hapla'']] | | [[Meloidogyne hapla|''Meloidogyne hapla'']] | ||
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− | | | + | | genomic |
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|[[Pristionchus pacificus|''Pristionchus pacificus'']] | |[[Pristionchus pacificus|''Pristionchus pacificus'']] | ||
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− | | | + | | genomic, proteins |
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Revision as of 12:18, 5 January 2010
Species | Genome Browser |
BLAST | BLAT | Genes | Sequences | Proteins | Orthology |
Brugia malayi | yes -missing name data for gene models -gene page available for brigpep, remaneiX, and wormpep protein match features |
BLAST Search genomic, proteins |
|||||
Caenorhabditis elegans | yes | BLAST Search genes, proteins, ests, genomic |
BLAT Search | Gene Summary | Sequence Summary | Protein Summary | |
Caenorhabditis brenneri | genomic, proteins | ||||||
Caenorhabditis briggsae | Yes - includes nGASP predictions | genes, proteins, ests, genomic | genomic | ||||
Caenorhabditis japonica | yes - includes nGASP predictions - bug: when click 'update image' all toggle buttons disappear, this happens with other species too |
genomic | Gene Summary | Sequence Summary | Protein Summary | ||
Caenorhabditis remanei | [1] - includes nGASP predictions |
genomic, proteins | Gene Summary | Sequence Summary -error probably with inline image |
Protein Summary | ||
Haemonchus contortus | |||||||
Meloidogyne hapla | genomic | ||||||
Meloidogyne incognita | |||||||
Pristionchus pacificus | genomic, proteins | ||||||