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- * Focusing on curation process (as opposed to publication process) ** Curation4 KB (544 words) - 16:22, 5 January 2017
- ==Curation analysis features== ...e || automating newmutant sentence identification/extraction for phenotype curation.6 KB (1,024 words) - 23:02, 13 August 2010
- * Summary of curation work - this summary should be curator driven, in some cases the summary wil |'''Data class/type'''||'''Curation focus'''||'''Postgres Tables'''<br>([[all OA tables | oa tables]])||'''Cura4 KB (580 words) - 18:13, 6 October 2017
- [[Category:Curation]]633 bytes (76 words) - 18:59, 10 August 2010
- [[Category:Curation]]635 bytes (76 words) - 19:01, 10 August 2010
- ...stion: do we want to take 'functional annotation' papers out of Textpresso/Curation pipelines? === Topic Curation ===6 KB (823 words) - 19:38, 2 January 2014
- * Need to chase up the 111 legacy pending curation gk alleles * Need to chase up the 766 legacy pending curation ok alleles2 KB (306 words) - 08:41, 7 June 2019
- [[Category:Curation]]533 bytes (81 words) - 23:09, 13 August 2010
- * <b>Gene-structure curation</b> * Process and pathway curation and display (Karen; 10 minutes)5 KB (644 words) - 22:02, 23 January 2013
- [[Category:Curation]]856 bytes (106 words) - 18:22, 16 August 2010
- = Specifications for Gene - GO Curation Status Form = ...ns protein-coding genes do not have one or more aspects (BP, MF, CC) of GO curation.3 KB (487 words) - 20:29, 18 March 2019
- ==Pick a paper and access the curation form== * Access the curation.cgi from the WBPaperID page itself4 KB (751 words) - 23:40, 13 August 2010
- ...there is a new model for GO annotations that will allow us to have all GO curation in WormBase. * GO curation model change2 KB (288 words) - 16:54, 4 December 2014
- [[Category:Curation]]395 bytes (55 words) - 21:11, 23 July 2013
- **Organization of categories by task? e.g. GO curation, Phenotype curation, Expression patterns, etc. **Curation Status - integration with curation databases - which ones?6 KB (901 words) - 19:21, 29 November 2011
- We also hold "curation data", for example the curation status of a paper, separately * Some possible changes to WB models to improve our paper, author, person curation pipelines3 KB (487 words) - 16:36, 18 March 2021
- * Curation status and effort. * Topic Curation – how we do this.5 KB (763 words) - 00:51, 19 September 2014
- [[Category:Curation]]600 bytes (92 words) - 18:46, 17 August 2010
- * Yesterday we (FlyBase, ZFIN, and WormBase) presented paper curation status tracking * WebPhenote is currently being built for human phenotype curation5 KB (715 words) - 15:49, 4 August 2016
- [[Category:Curation]]1 KB (159 words) - 18:33, 16 August 2010
- [[Category:Curation]]736 bytes (119 words) - 18:48, 17 August 2010
- === Topic Curation === * Working out pipeline for curation6 KB (974 words) - 17:28, 3 September 2014
- ...ir label in Postgres, were never intended to be put through the first pass curation pipeline. Going forward, any papers marked as such in the paper editor, sh [[Category:Curation]]2 KB (352 words) - 18:13, 17 August 2010
- * Curation tools (Collonade, editor) === Curation ===5 KB (741 words) - 10:57, 21 August 2015
- GO curation - Issue with connecting to species objects as the taxon I'd in the file is704 bytes (104 words) - 12:27, 28 January 2014
- ...ization will be used to continually train an HMM to identify sentences for curation from new papers. Each paper listed on this page will have one of three curation status tags: Done, Not Done, Partial8 KB (1,272 words) - 21:49, 19 December 2012
- [[Category:Curation]]412 bytes (47 words) - 15:19, 15 April 2011
- === Parasite Paper Pipeline and Curation Status Tracking === ...ussed last week the options for accurately tracking data type flagging and curation status for these papers4 KB (646 words) - 17:33, 1 September 2016
- Publishing and Curation Data Curation (Dealing with Supplementary Data)2 KB (283 words) - 19:20, 11 April 2014
- * Gary Williams -- ''Curation and analysis of nematode RNASeq data'' * Chris Grove -- ''Community phenotype curation''5 KB (696 words) - 13:32, 13 July 2018
- ...nt these need to be supported (or constrained) in the persistent store and curation tool ** Do we want/need to support curation to entities from non-canonical species?2 KB (348 words) - 17:52, 2 February 2023
- ...rs to textpresso as we get them into the database each week? For new paper curation it would be good to get papers when published into Textpresso, and in an au633 bytes (113 words) - 17:29, 19 April 2011
- === Community Curation Tracker CGI === ...tomate many steps of the e-mailing process to authors requesting community curation and to track those papers for which we've sent e-mails6 KB (926 words) - 16:49, 3 December 2015
- === Adding WormBase-Parasite Paper to the Curation Pipeline (Kimberly) === ...then incorporate parasite papers into downstream SVM flagging pipeline and curation status form5 KB (689 words) - 15:35, 7 April 2016
- first-pass curation should be clearly distinguished by a person ID (textpresso ''Resolve duplicates in FP Curation checkout pages''6 KB (1,045 words) - 21:14, 24 September 2010
- **#Gene related/biological data (curation decisions, what's excluded, why, time frames,etc) **#Genomic data (data related to species, assemblies, gene model curation etc)3 KB (511 words) - 18:54, 18 February 2021
- ...captures Gene::GO associateions and additional meta data associated with a curation event ...ype_of_construct sub tags as a controlled vocabulary is now imposed in the curation tool3 KB (337 words) - 16:15, 19 February 2015
- 3e i. Data Curation Does the resource provide documentation of the data curation process/deposition workflow? Please describe, with a url link to public doc4 KB (585 words) - 21:44, 7 July 2022
- === Diseases in Curation Status Form === * Once that is finalized, Chris and Juancarlos will help get Disease into the Curation Status Form as a data type10 KB (1,664 words) - 17:02, 4 December 2013
- ...by WB would need to be re-evaluated: continue to mine but share with other curation groups? no longer mine? new WB objects or pages? *Periodically review the form and add/remove data types and curation forms as needed6 KB (921 words) - 16:52, 4 January 2018
- *Capturing curation stats from the Curation Status form *What data types do we want to capture curation stats for that we are not currently?5 KB (850 words) - 15:32, 5 September 2013
- [[Category:Curation]]1 KB (159 words) - 18:57, 10 August 2010
- === Community curation of allele-phenotype === ** 88 out of 500 have some curation by community (~18%)5 KB (776 words) - 16:50, 7 January 2016
- ...or reviews the papers daily to select those that should be included in the curation pipeline and WormBase bibliography. [[Category:Curation]]3 KB (403 words) - 16:02, 27 March 2019
- * Creating a curation interface/tool: ...dition to primary data types (e.g. if we are focused on disease annotation curation, we will need to load genes, alleles, strains, etc. in addition to the dise5 KB (670 words) - 16:00, 5 August 2021
- ...yet have a mechanism for marking genes as comprehensively annotated in our curation database, so currently we're using the following criteria for assessing ann [[Category:Curation]]2 KB (379 words) - 18:52, 16 August 2010
- * Adding tags to ?Paper and ?Person to track community curation more explicitly in WormBase Chris - will continue work on refining the tags for phenotype curation.2 KB (347 words) - 17:44, 7 November 2019
- The paper editor is accessible either from the curation index page (click on the second link, paper_editor.cgi): http://tazendra.c *If the paper being entered is used solely as evidence for curation, e.g. a concise description or topic, and does NOT otherwise contain inform7 KB (1,204 words) - 18:58, 30 June 2014
- [[Category:Curation]]1 KB (200 words) - 17:59, 6 October 2017
- Chris Stark made a file available with BioGRID worm curation that has the following columns:823 bytes (120 words) - 21:03, 13 June 2011
- 1. Moving forward with Alliance-friendly Person pages for community curation/authorship tracking<br> *AFP community curation2 KB (325 words) - 15:24, 7 October 2021
- ...the standard HGNC human gene in disease model curation and other types of curation ** Karen: literature curation WG would be interested in having a central name server, looking for ideas3 KB (529 words) - 18:26, 16 July 2020
- ** No longer needed for concise description community curation tracker ...e Cecilia could link a WBPerson as corresponding author for a paper during curation?5 KB (873 words) - 14:41, 4 February 2021
- ...ng the cohesion of the AGR group members (common infrastructure and common curation efforts). ...and controlled vocabularies that each MOD is currently using for phenotype curation4 KB (574 words) - 01:54, 2 March 2018
- [[Category:Curation]]1 KB (173 words) - 17:55, 16 August 2010
- * Need a better way to report allele details; curation of alleles can happen at Caltech or Hinxton; need to discuss * Need to minimize/eliminate redundant curation effort3 KB (427 words) - 15:32, 1 August 2019
- == Topic Curation == * GO curation - Issue with connecting to species objects as the taxon I'd in the file is4 KB (617 words) - 17:14, 23 January 2014
- === WormBase curation === * Tim Schedl: WB needs to do more curation for phenotype and variation6 KB (903 words) - 15:28, 2 April 2020
- * Curation status freezes have been collected (daily?) * We need some trial LEGO curation to start working out the process8 KB (1,234 words) - 12:36, 4 June 2014
- Curation Status/Statistics Tool *Interactive form vs. static page showing curation/flagging statisitcs5 KB (843 words) - 17:26, 1 November 2012
- 5. MAT: Curation of other nematodes genetic maps; nomenclature standardization.764 bytes (110 words) - 15:53, 2 October 2014
- === Daniela starting on gene regulation curation === * Daniela working with Xiaodong to learn the curation process4 KB (604 words) - 15:28, 5 May 2016
- Effective Textpresso searches, and subsequent curation, require the most complete lists of gene and protein names possible. In addition, some types of curation may require matching gene names only, others matching protein names only, o5 KB (857 words) - 23:28, 23 August 2011
- === Community Curation Mass Email update === === SAB Literature Curation overview ===7 KB (1,062 words) - 14:41, 2 August 2018
- * LEGO Curation/Noctua Development === LEGO curation / Noctua Development ===6 KB (801 words) - 17:29, 2 July 2014
- ** Community curation (report numbers) === Curation pipeline comparisons ===9 KB (1,336 words) - 15:32, 2 June 2016
- [[Category:Curation]]1 KB (193 words) - 18:58, 10 August 2010
- * Workshop at NLM in days following TAGC about curation at scale (Kimberly attending and chairing session) ** Phenotype community curation?5 KB (747 words) - 16:31, 5 December 2019
- # We envision a pipeline whereby BioGRID and WB can exchange interaction curation information via mapping of the database objects between the two groups. #* Going forward, WB will use/incorporate parts BioGRID curation for physical Interactions (Will alter WB data Model)3 KB (391 words) - 22:13, 22 February 2011
- ** Props out to community on Phenotype curation849 bytes (126 words) - 16:46, 16 June 2017
- ...The goal is to explore the possibility of notifying users some of the new curation since the data freeze for the WS build. === Graphical curation tool update===4 KB (695 words) - 14:44, 3 December 2020
- * currently there is no curation planned * cooperate with UniProt on curation?2 KB (329 words) - 17:10, 6 August 2015
- === Updating Curation Status Form === === LEGO curation ===5 KB (843 words) - 16:32, 4 December 2014
- * MODs have different curation policies. For example, BioGrid has predicted protein-protein interactions. * The gene description curation tool developed by Juancarlos got good feedback. Juancarlos will add more fu4 KB (694 words) - 21:33, 19 December 2019
- * Common curation database: No concrete plan for common curation infrastructure but ideas have been thrown about....is it achievable in curr2 KB (376 words) - 16:20, 10 July 2017
- * populate the postgres table and the corresponding first pass paper curation form used by fp curators ...st pass curation list as having author data, therefore marked for priority curation6 KB (1,017 words) - 19:34, 2 December 2011
- Sequence Feature curation *Enhancer curation?7 KB (1,059 words) - 15:37, 1 August 2013
- ** Chris will look at curation goals, want ambitious but realistic === Incentives for community curation ===6 KB (910 words) - 15:23, 5 October 2017
- === NAR paper community curation? === * Not much has changed about community curation fundamentally since last NAR paper6 KB (912 words) - 01:40, 15 September 2017
- [[Category:Curation]]1 KB (166 words) - 19:35, 10 August 2010
- Gene Ontology Curation at TAIR ==Specifications for Curation Pipeline==14 KB (2,091 words) - 16:28, 9 December 2010
- === Movie curation === === Unfolded Protein Response curation - Pilot topic curation ===13 KB (1,983 words) - 16:40, 7 November 2013
- ...and use Curator_confirmed evidence (the same evidence we use for WB manual curation) == Themed Curation ==8 KB (1,246 words) - 15:52, 12 November 2013
- =Author Curation=1,002 bytes (141 words) - 23:09, 30 April 2011
- === Discussions on Value of Manual Curation === === Enhancer curation ===8 KB (1,225 words) - 16:33, 3 October 2013
- ...uthor first-pass tables and paper is placed in the pipeline for first-pass curation (Juancarlos will make a filter so these papers will be prioritized for firs [[Category:Curation]]3 KB (471 words) - 19:53, 19 April 2012
- **Be prepared to report on curation status of your data type and what we might need **first-pass curation could capture the corresponding author3 KB (407 words) - 01:16, 19 February 2011
- Title: WormBase 2019 - Data, Tools and Community Curation ...base, Model Organism data at the Alliance of Genome Research and Community Curation forms9 KB (1,364 words) - 15:39, 7 February 2019
- ===Literature Curation=== ...s can query and sort the list according to reference count, gene name, and curation status.13 KB (1,830 words) - 16:40, 13 December 2012
- *How much have we curated? What is our rate of curation? *Not caught up on RNAi and allele curation by end of this term6 KB (944 words) - 16:25, 1 November 2012
- [[Category:Curation]]1 KB (183 words) - 17:49, 17 August 2010
- ...ation forms could straightforwardly capture the slices of data that needed curation, and let acedb handle how the data relates to each other. ** Caltech PostgreSQL works really well for curation and is easy to adapt and expand, but none of the data relates to each other4 KB (743 words) - 12:22, 5 March 2021
- ===Sequence feature curation=== === Sequence Feature Curation ===9 KB (1,570 words) - 16:36, 21 September 2023
- **This is the code for the curation form. ...hat lists the names of the tables used for the previous version of the CCC curation forms.5 KB (817 words) - 15:11, 18 February 2014
- [[Category:Curation]]1 KB (205 words) - 17:49, 17 August 2010
- * Discussion regarding communication/coordination of curation effort (& data display) between WormBase and ParaSite * What curation/work will ParaSite be taking over that we (WormBase) can stop doing?7 KB (1,079 words) - 19:04, 6 November 2014
- * 48 papers requested received curation (2% response rate) === Community curation volunteers ===7 KB (1,020 words) - 15:33, 7 May 2020
- ===Improving display and recognition of community curation===985 bytes (154 words) - 21:08, 6 January 2022
- * Train students to do curation on phenotype and GO. * Human genes should be referenced as HGNC ID objects in WB curation database.3 KB (410 words) - 18:23, 24 March 2020
- [[Category:Curation]]2 KB (259 words) - 23:32, 13 August 2010
