Difference between revisions of "BioGRID ftp file to WormBase Model"
(Created page with 'Chris has made a file available with Biogrid worm curation that has the following columns: Systematic A (e.g. AC7.2) Systematic B BioGRID ID A BioGRID ID B Wormbase ID A (e.g…') |
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| − | Chris | + | Chris Stark made a file available with BioGRID worm curation that has the following columns: |
| − | worm curation that has the following columns: | ||
Systematic A (e.g. AC7.2) | Systematic A (e.g. AC7.2) | ||
| + | |||
Systematic B | Systematic B | ||
| + | |||
BioGRID ID A | BioGRID ID A | ||
| + | |||
BioGRID ID B | BioGRID ID B | ||
| + | |||
Wormbase ID A (e.g. WBGene00004929) | Wormbase ID A (e.g. WBGene00004929) | ||
| + | |||
Wormbase ID B | Wormbase ID B | ||
| + | |||
Experimental System | Experimental System | ||
| + | |||
Experimental System Type (physical or genetic) | Experimental System Type (physical or genetic) | ||
| + | |||
Author | Author | ||
| + | |||
Pubmed | Pubmed | ||
| + | |||
Organism Interactor A | Organism Interactor A | ||
| + | |||
Organism Interactor B | Organism Interactor B | ||
| + | |||
Quantitative Score (hyphen if no score) | Quantitative Score (hyphen if no score) | ||
| + | |||
Modification | Modification | ||
| + | |||
Throughput (high throughput or low throughput) | Throughput (high throughput or low throughput) | ||
| + | |||
Qualification (pipe-delimited) | Qualification (pipe-delimited) | ||
| + | |||
Phenotype (pipe-delimited phenotype:phenotype type) | Phenotype (pipe-delimited phenotype:phenotype type) | ||
| − | The Biogrid IDs are included in case WB wants to make links back to | + | |
| − | Biogrid using the format: | + | The Biogrid IDs are included in case WB wants to make links back to Biogrid using the format: |
http://thebiogrid.org/42412 | http://thebiogrid.org/42412 | ||
This file will be posted at the following url on a monthly basis: | This file will be posted at the following url on a monthly basis: | ||
http://www.thebiogrid.org/downloads/datasets/WORMBASE.tab.txt | http://www.thebiogrid.org/downloads/datasets/WORMBASE.tab.txt | ||
| + | |||
| + | Back to [[Physical Interactions]] | ||
Latest revision as of 21:03, 13 June 2011
Chris Stark made a file available with BioGRID worm curation that has the following columns:
Systematic A (e.g. AC7.2)
Systematic B
BioGRID ID A
BioGRID ID B
Wormbase ID A (e.g. WBGene00004929)
Wormbase ID B
Experimental System
Experimental System Type (physical or genetic)
Author
Pubmed
Organism Interactor A
Organism Interactor B
Quantitative Score (hyphen if no score)
Modification
Throughput (high throughput or low throughput)
Qualification (pipe-delimited)
Phenotype (pipe-delimited phenotype:phenotype type)
The Biogrid IDs are included in case WB wants to make links back to Biogrid using the format:
http://thebiogrid.org/42412
This file will be posted at the following url on a monthly basis: http://www.thebiogrid.org/downloads/datasets/WORMBASE.tab.txt
Back to Physical Interactions
