Difference between revisions of "2018"
(Created page with "= Annotation Progress = '''WormBase GO Annotation Statistics as of December 5, 2018''' Manual annotation statistics are summarized in Tables 1 - 3. Total number of unique m...") |
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Manual annotation statistics are summarized in Tables 1 - 3. | Manual annotation statistics are summarized in Tables 1 - 3. | ||
− | Total number of unique manual annotations: | + | Total number of unique manual annotations: 52557 (+18.4% from 2017) |
− | Total number of genes with manual annotations: | + | Total number of genes with manual annotations: 7850 (+4.5% from 2016) |
'''Table 1: Summary of ''C. elegans'' Manual Biological Process Annotations''' | '''Table 1: Summary of ''C. elegans'' Manual Biological Process Annotations''' |
Revision as of 20:21, 5 December 2018
Annotation Progress
WormBase GO Annotation Statistics as of December 5, 2018
Manual annotation statistics are summarized in Tables 1 - 3.
Total number of unique manual annotations: 52557 (+18.4% from 2017)
Total number of genes with manual annotations: 7850 (+4.5% from 2016)
Table 1: Summary of C. elegans Manual Biological Process Annotations
Numbers refer to total number of annotations; annotations in parentheses represent annotations with extensions.
Annotation Group | IMP | IGI | IDA | ISS | TAS | IEP | IPI | IC | NAS | ISM | ND | IBA | IKR | HMP | HGI |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
WormBase | 8102 (451) | 3215 (92) | 1135 (33) | 328 (1) | 108 | 310 (18) | 51 | 73 (10) | 24 | 2 | 3 | 0 | 1 | 0 | 0 |
UniProt | 3189 (751) | 2331 (369) | 212 (22) | 203 | 29 (3) | 14 | 2 (2) | 5 | 103 | 0 | 68 | 0 | 0 | 18(18) | 135 (135) |
CACAO | 20 | 1 | 3 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
BHF-UCL | 11 | 0 | 0 | 2 | 0 | 4 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
MGI | 4 | 0 | 6 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
HGNC | 0 | 0 | 0 | 4 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
GO_Central | 2 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 7430 | 0 | 0 | 0 |
ParkinsonsUK-UCL | 14 (4) | 9 (3) | 11 | 3 (1) | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
CAFA | 2 | 0 | 2 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Totals | 11344 (1206) | 5556 (464) | 1369 (55) | 540 (2) | 137 (3) | 328 (18) | 53 (2) | 83 (10) | 127 | 2 | 71 | 7530 | 1 | 18 (18) | 135 (135) |
Table 2: Summary of C. elegans Molecular Function Annotations
Numbers refer to total number of annotations; annotations in parentheses represent annotations with extensions.
Annotation Group | IMP | IGI | IDA | ISS | TAS | IPI | IC | NAS | ISM | ND | IBA | ISO | IKR |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
WormBase | 174 (11) | 32 | 1895 (214) | 653 (5) | 45 | 1355 (5) | 22 | 4 | 3 | 79 | 0 | 2 | 2 |
IntAct | 0 | 0 | 0 | 0 | 0 | 2250 (56) | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
UniProt | 111 (11) | 23 | 165 (5) | 198 | 24 (1) | 458 (3) | 4 | 51 | 0 | 123 | 0 | 0 | 0 |
CACAO | 1 | 0 | 7 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
GO_Central | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 5957 | 0 | 1 |
HGNC | 0 | 0 | 0 | 2 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
ParkinsonsUK-UCL | 0 | 0 | 0 | 0 | 0 | 2 (2) | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
CAFA | 1 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Reactome | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Totals | 287 (22) | 55 | 2067 (219) | 853 (5) | 70 (1) | 4066 (66) | 26 | 55 | 3 | 202 | 5957 | 2 | 3 |
Table 3: Summary of C. elegans Cellular Component Annotations
Numbers refer to total number of annotations; annotations in parentheses represent annotations with extensions.
Annotation Group | IMP | IGI | IDA | ISS | TAS | IPI | IC | NAS | ISM | ND | IBA |
---|---|---|---|---|---|---|---|---|---|---|---|
WormBase | 9 | 0 | 6674 (798) | 386 | 27 | 143 (3) | 50 (1) | 7 | 4 | 12 | 0 |
GO_Central | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 6063 |
UniProt | 72 (22) | 1 | 711 (100) | 233 | 20 | 1 | 19 | 49 | 0 | 117 | 0 |
MGI | 0 | 0 | 16 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
HGNC | 0 | 0 | 0 | 8 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
BHF-UCL | 0 | 0 | 7 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
CACAO | 0 | 0 | 3 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Reactome | 0 | 0 | 0 | 0 | 8 | 0 | 0 | 0 | 0 | 0 | 0 |
SynGO | 0 | 0 | 0 | 1 (1) | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Totals | 81 (22) | 1 | 7411 (898) | 620 (1) | 55 | 144 (3) | 69 (1) | 56 | 4 | 129 | 6063 |
Table 4: Summary of C. elegans Computational Annotations
Summary Statistics Based on WormBase Release WS262
Genes Stats:
Genes with GO_term connections 13880 Non-IEA-only annotation 1170 IEA-only annotation 6290 Both IEA and non-IEA annotations 6420
GO_term Stats:
Distinct GO_terms connected to Genes 6023 Associated by non-IEA only 3567 Associated by IEA only 817 Associated by both IEA and non-IEA 1639
Type of Annotation | IEA |
---|---|
Interpro2GO | 21823 |
Other (e.g. Swiss-Prot keyword mapping) | 44965 |