Difference between revisions of "2018"
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{| border="1" cellpading="2" | {| border="1" cellpading="2" | ||
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− | ! Annotation Group !! IMP !! IGI !! IDA !! ISS !! TAS !! IEP !! IPI !! IC !! NAS !! ISM !! ND !! IBA !! IKR !! HMP !! HGI | + | ! Annotation Group !! IMP !! IGI !! IDA !! ISS !! TAS !! IEP !! IPI !! IC !! NAS !! ISM !! ND !! IBA !! IKR !! HEP !! HMP !! HGI |
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! WormBase | ! WormBase | ||
− | | | + | | 8031 (454)|| 3208 (90) || 1132 (33) || 324 (1) || 105 || 108 (11) || 51 || 63 (10) || 22 || 2 || 2 || 0 || 2 || 189 || 0 || 0 |
|- | |- | ||
!UniProt | !UniProt |
Revision as of 18:44, 11 December 2018
Annotation Progress
WormBase GO Annotation Statistics as of December 5, 2018
Manual annotation statistics are summarized in Tables 1 - 3.
Total number of unique manual annotations: 52557 (+18.4% from 2017)
Total number of genes with manual annotations: 7850 (+4.5% from 2017)
Table 1: Summary of C. elegans Manual Biological Process Annotations
Numbers refer to total number of annotations; annotations in parentheses represent annotations with extensions.
Annotation Group | IMP | IGI | IDA | ISS | TAS | IEP | IPI | IC | NAS | ISM | ND | IBA | IKR | HEP | HMP | HGI |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
WormBase | 8031 (454) | 3208 (90) | 1132 (33) | 324 (1) | 105 | 108 (11) | 51 | 63 (10) | 22 | 2 | 2 | 0 | 2 | 189 | 0 | 0 |
UniProt | 3189 (751) | 2331 (369) | 212 (22) | 203 | 29 (3) | 14 | 2 (2) | 5 | 103 | 0 | 68 | 0 | 0 | 18(18) | 135 (135) | |
CACAO | 20 | 1 | 3 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | |
BHF-UCL | 11 | 0 | 0 | 2 | 0 | 4 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | |
MGI | 4 | 0 | 6 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | |
HGNC | 0 | 0 | 0 | 4 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | |
GO_Central | 2 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 7430 | 0 | 0 | 0 | |
ParkinsonsUK-UCL | 14 (4) | 9 (3) | 11 | 3 (1) | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | |
CAFA | 2 | 0 | 2 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | |
Totals | 11344 (1206) | 5556 (464) | 1369 (55) | 540 (2) | 137 (3) | 328 (18) | 53 (2) | 83 (10) | 127 | 2 | 71 | 7530 | 1 | 18 (18) | 135 (135) |
Table 2: Summary of C. elegans Molecular Function Annotations
Numbers refer to total number of annotations; annotations in parentheses represent annotations with extensions.
Annotation Group | IMP | IGI | IDA | ISS | TAS | IPI | IC | NAS | ISM | ND | IBA | ISO | IKR |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
WormBase | 174 (11) | 32 | 1895 (214) | 653 (5) | 45 | 1355 (5) | 22 | 4 | 3 | 79 | 0 | 2 | 2 |
IntAct | 0 | 0 | 0 | 0 | 0 | 2250 (56) | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
UniProt | 111 (11) | 23 | 165 (5) | 198 | 24 (1) | 458 (3) | 4 | 51 | 0 | 123 | 0 | 0 | 0 |
CACAO | 1 | 0 | 7 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
GO_Central | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 5957 | 0 | 1 |
HGNC | 0 | 0 | 0 | 2 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
ParkinsonsUK-UCL | 0 | 0 | 0 | 0 | 0 | 2 (2) | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
CAFA | 1 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Reactome | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Totals | 287 (22) | 55 | 2067 (219) | 853 (5) | 70 (1) | 4066 (66) | 26 | 55 | 3 | 202 | 5957 | 2 | 3 |
Table 3: Summary of C. elegans Cellular Component Annotations
Numbers refer to total number of annotations; annotations in parentheses represent annotations with extensions.
Annotation Group | IMP | IGI | IDA | ISS | TAS | IPI | IC | NAS | ISM | ND | IBA |
---|---|---|---|---|---|---|---|---|---|---|---|
WormBase | 9 | 0 | 6674 (798) | 386 | 27 | 143 (3) | 50 (1) | 7 | 4 | 12 | 0 |
GO_Central | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 6063 |
UniProt | 72 (22) | 1 | 711 (100) | 233 | 20 | 1 | 19 | 49 | 0 | 117 | 0 |
MGI | 0 | 0 | 16 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
HGNC | 0 | 0 | 0 | 8 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
BHF-UCL | 0 | 0 | 7 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
CACAO | 0 | 0 | 3 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Reactome | 0 | 0 | 0 | 0 | 8 | 0 | 0 | 0 | 0 | 0 | 0 |
SynGO | 0 | 0 | 0 | 1 (1) | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Totals | 81 (22) | 1 | 7411 (898) | 620 (1) | 55 | 144 (3) | 69 (1) | 56 | 4 | 129 | 6063 |
Table 4: Summary of C. elegans Computational Annotations
Summary Statistics Based on WormBase Release WS262
Genes Stats:
Genes with GO_term connections 13880 Non-IEA-only annotation 1170 IEA-only annotation 6290 Both IEA and non-IEA annotations 6420
GO_term Stats:
Distinct GO_terms connected to Genes 6023 Associated by non-IEA only 3567 Associated by IEA only 817 Associated by both IEA and non-IEA 1639
Type of Annotation | IEA |
---|---|
Interpro2GO | 21823 |
Other (e.g. Swiss-Prot keyword mapping) | 44965 |