Difference between revisions of "WormBase Model:Homology group"
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== Model == | == Model == | ||
<pre> | <pre> | ||
+ | ///////////////////////////////////////////////////////////////////////////////// | ||
+ | // | ||
+ | // ?Homology_group class - krb 031120 | ||
+ | // Class to handle clusters of orthologus genes (COG) and other related data | ||
+ | // | ||
+ | ///////////////////////////////////////////////////////////////////////////////// | ||
+ | |||
+ | |||
+ | ?Homology_group Evidence #Evidence | ||
+ | Title ?Text | ||
+ | DB_info Database ?Database ?Database_field ?Accession_number XREF Homology_group | ||
+ | Group_type UNIQUE COG COG_type KOG | ||
+ | TWOG | ||
+ | FOG | ||
+ | LSE | ||
+ | COG_code #COG_codes | ||
+ | HOPS_group // Sonnhammer | ||
+ | RIO_group // Eddy | ||
+ | InParanoid_group | ||
+ | OrthoMCL_group //erich Nov06 | ||
+ | GO_term ?GO_term XREF Homology_group | ||
+ | Protein ?Protein XREF Homology_group | ||
+ | Remark ?Text #Evidence | ||
</pre> | </pre> | ||
== Proposed Changes == | == Proposed Changes == | ||
+ | ?Homology_group Evidence #Evidence | ||
+ | Title ?Text | ||
+ | DB_info Database ?Database ?Database_field ?Accession_number XREF Homology_group | ||
+ | Group_type UNIQUE COG COG_type #Homology_type | ||
+ | COG_code #COG_codes | ||
+ | eggNOG eggNOG_type #Homology_type | ||
+ | eggNOG_code #COG_codes | ||
+ | InParanoid_group | ||
+ | OrthoMCL_group //erich Nov06 | ||
+ | GO_term ?GO_term XREF Homology_group | ||
+ | Protein ?Protein XREF Homology_group | ||
+ | Remark ?Text #Evidence | ||
+ | |||
+ | #Homology_type KOG | ||
+ | TWOG | ||
+ | FOG | ||
+ | LSE | ||
+ | NOG //eggNOG - standard cluster | ||
+ | euNOG //eggNOG - eukaryote cluster | ||
+ | meNOG //eggNOG - metazoan cluster | ||
+ | |||
+ | And I want to remove the HOPS and RIO tags | ||
+ | |||
+ | == Unused tags== | ||
+ | |||
+ | <pre> | ||
+ | Evidence | ||
+ | DB_info Database | ||
+ | Group_type HOPS_group | ||
+ | RIO_group | ||
+ | GO_term | ||
+ | Remark | ||
+ | </pre> |
Latest revision as of 11:11, 23 May 2011
Curator Comments/Description
Model
///////////////////////////////////////////////////////////////////////////////// // // ?Homology_group class - krb 031120 // Class to handle clusters of orthologus genes (COG) and other related data // ///////////////////////////////////////////////////////////////////////////////// ?Homology_group Evidence #Evidence Title ?Text DB_info Database ?Database ?Database_field ?Accession_number XREF Homology_group Group_type UNIQUE COG COG_type KOG TWOG FOG LSE COG_code #COG_codes HOPS_group // Sonnhammer RIO_group // Eddy InParanoid_group OrthoMCL_group //erich Nov06 GO_term ?GO_term XREF Homology_group Protein ?Protein XREF Homology_group Remark ?Text #Evidence
Proposed Changes
?Homology_group Evidence #Evidence Title ?Text DB_info Database ?Database ?Database_field ?Accession_number XREF Homology_group Group_type UNIQUE COG COG_type #Homology_type COG_code #COG_codes eggNOG eggNOG_type #Homology_type eggNOG_code #COG_codes InParanoid_group OrthoMCL_group //erich Nov06 GO_term ?GO_term XREF Homology_group Protein ?Protein XREF Homology_group Remark ?Text #Evidence
#Homology_type KOG TWOG FOG LSE NOG //eggNOG - standard cluster euNOG //eggNOG - eukaryote cluster meNOG //eggNOG - metazoan cluster
And I want to remove the HOPS and RIO tags
Unused tags
Evidence DB_info Database Group_type HOPS_group RIO_group GO_term Remark