WS238 Models.wrm

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General housekeeping

None

Curator Models proposals

Removal of Human_disease_relevance from ?Gene - Ranjana

< 					 Human_disease_relevance ?Text #Evidenc // Ranjana [110601 pad]

Historical Gene additions - Chris

Caltech would like to only maintain primary curated data and update to the current WBGene when dumping data for upload

To accomplish this the following tag structure was added to multiple classes.

  • ?Interaction
  • ?Expr_pattern
  • ?Antibody
  • ?Transgene
  • ?WBProcess
> 		Historical_gene   ?Gene #Evidence

Other tag changes to accommodate the change

  • #Interactor_info

> 		       Inferred_automatically Text                 // a script has updated this connection
  •  ?Expr_pattern

< ?Expr_pattern	Expression_of	Gene ?Gene XREF Expr_pattern
> ?Expr_pattern	Expression_of	Gene ?Gene XREF Expr_pattern #Evidence
  •  ?Antibody

< 	  Gene ?Gene XREF Antibody
> 	  Gene ?Gene XREF Antibody #Evidence
  •  ?Transgene

<                 Promoter  Driven_by_gene ?Gene XREF Drives_transgene		// eventually change this tag to promoter_gene
>                 Promoter  Driven_by_gene ?Gene XREF Drives_transgene #Evidence // eventually change this tag to promoter_gene
<                           Gene ?Gene XREF Transgene_product Text
>                           Gene ?Gene XREF Transgene_product #Evidence 
< 			  3_UTR  ?Gene
> 			  3_UTR  ?Gene #Evidence
  • #Evidence hash

Addition to supplement historical gene.

> 	  Remark ?Text

Strain change - M.A.

Removal of the additional Unique tag in this branch - ERROR fix

< 		   Elevation UNIQUE Unique Float #Position_confidence // Elevation above sea level.
> 		   Elevation UNIQUE Float #Position_confidence // Elevation above sea level.

?Variation - M.A.

< 		  Strain	 ?Strain XREF Variation
> 		  Strain	 ?Strain XREF Variation #Evidence


Feature/Variation - M.A./Gary W.

Removal of Text from this as it wasn't used/needed.

< 			  Source_location UNIQUE Int UNIQUE ?Sequence UNIQUE Int UNIQUE Int UNIQUE Text #Evidence 
> 			  Source_location UNIQUE Int UNIQUE ?Sequence UNIQUE Int UNIQUE Int UNIQUE #Evidence