Difference between revisions of "WormBase Model:Rearrangement"
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== Model == | == Model == | ||
<pre> | <pre> | ||
+ | //////////////////////////////////////////////////////////////////////////////// | ||
+ | // | ||
+ | // ?Rearrangement class | ||
+ | // | ||
+ | //////////////////////////////////////////////////////////////////////////////// | ||
+ | |||
+ | ?Rearrangement Evidence #Evidence | ||
+ | Name Other_name ?Text | ||
+ | Variation ?Variation XREF Rearrangement | ||
+ | Type Deletion | ||
+ | Duplication Free_dup | ||
+ | Translocation | ||
+ | Compound Text | ||
+ | Phenotype ?Phenotype XREF Rearrangement #Phenotype_info | ||
+ | Phenotype_not_observed ?Phenotype XREF Not_in_Rearrangement #Phenotype_info //added by Wen to separate Not phenotype from real phenotypes | ||
+ | Balances ?Map #Balancer | ||
+ | Marked By_variation ?Variation XREF Marked_rearrangement | ||
+ | By_transgene ?Transgene XREF Marked_rearrangement | ||
+ | By_other ?Text | ||
+ | // possibility to refer to other Intervals to describe a complex rearrangement | ||
+ | // for the worm this is not too necessary, but important for fly and mouse | ||
+ | // or perhaps there should be another class Complex_Rear that refers to | ||
+ | // several intervals. | ||
+ | Reference_strain ?Strain | ||
+ | Species UNIQUE ?Species | ||
+ | Remark ?Text #Evidence | ||
+ | Isolation Author ?Author // use Person where possible, else use Author | ||
+ | Person ?Person | ||
+ | Date DateType | ||
+ | Mutagen UNIQUE Text UNIQUE Text // Text is dose | ||
+ | Source_rearrangement ?Rearrangement XREF Derived_rearrangement | ||
+ | Derived_rearrangement ?Rearrangement XREF Source_rearrangement | ||
+ | Map ?Map XREF Rearrangement #Map_position | ||
+ | Positive Gene_inside ?Gene XREF Inside_rearr #Evidence | ||
+ | Locus_inside ?Locus XREF Inside_rearr ?Author | ||
+ | Clone_inside ?Clone XREF Inside_rearr ?Author | ||
+ | Rearr_inside ?Rearrangement | ||
+ | Negative Gene_outside ?Gene XREF Outside_rearr #Evidence | ||
+ | Locus_outside ?Locus XREF Outside_rearr ?Author | ||
+ | Clone_outside ?Clone XREF Outside_rearr ?Author | ||
+ | Rearr_outside ?Rearrangement | ||
+ | Mapping_data Pos_neg_data ?Pos_neg_data | ||
+ | 2_point ?2_point_data | ||
+ | Multi_point ?Multi_pt_data | ||
+ | Display Hide_under UNIQUE ?Rearrangement XREF Hides | ||
+ | Hides ?Rearrangement // no XREF on purpose | ||
+ | Location ?Laboratory #Lab_Location | ||
+ | URL Text | ||
+ | Strain ?Strain XREF Rearrangement | ||
+ | Reference ?Paper XREF Rearrangement | ||
</pre> | </pre> | ||
== Proposed Changes == | == Proposed Changes == | ||
+ | |||
+ | ==Unused tags== | ||
+ | Phenotype | ||
+ | |||
+ | By_other | ||
+ | |||
+ | Species | ||
+ | |||
+ | URL |
Latest revision as of 08:51, 5 October 2010
Curator Comments/Description
Model
//////////////////////////////////////////////////////////////////////////////// // // ?Rearrangement class // //////////////////////////////////////////////////////////////////////////////// ?Rearrangement Evidence #Evidence Name Other_name ?Text Variation ?Variation XREF Rearrangement Type Deletion Duplication Free_dup Translocation Compound Text Phenotype ?Phenotype XREF Rearrangement #Phenotype_info Phenotype_not_observed ?Phenotype XREF Not_in_Rearrangement #Phenotype_info //added by Wen to separate Not phenotype from real phenotypes Balances ?Map #Balancer Marked By_variation ?Variation XREF Marked_rearrangement By_transgene ?Transgene XREF Marked_rearrangement By_other ?Text // possibility to refer to other Intervals to describe a complex rearrangement // for the worm this is not too necessary, but important for fly and mouse // or perhaps there should be another class Complex_Rear that refers to // several intervals. Reference_strain ?Strain Species UNIQUE ?Species Remark ?Text #Evidence Isolation Author ?Author // use Person where possible, else use Author Person ?Person Date DateType Mutagen UNIQUE Text UNIQUE Text // Text is dose Source_rearrangement ?Rearrangement XREF Derived_rearrangement Derived_rearrangement ?Rearrangement XREF Source_rearrangement Map ?Map XREF Rearrangement #Map_position Positive Gene_inside ?Gene XREF Inside_rearr #Evidence Locus_inside ?Locus XREF Inside_rearr ?Author Clone_inside ?Clone XREF Inside_rearr ?Author Rearr_inside ?Rearrangement Negative Gene_outside ?Gene XREF Outside_rearr #Evidence Locus_outside ?Locus XREF Outside_rearr ?Author Clone_outside ?Clone XREF Outside_rearr ?Author Rearr_outside ?Rearrangement Mapping_data Pos_neg_data ?Pos_neg_data 2_point ?2_point_data Multi_point ?Multi_pt_data Display Hide_under UNIQUE ?Rearrangement XREF Hides Hides ?Rearrangement // no XREF on purpose Location ?Laboratory #Lab_Location URL Text Strain ?Strain XREF Rearrangement Reference ?Paper XREF Rearrangement
Proposed Changes
Unused tags
Phenotype
By_other
Species
URL