Difference between revisions of "WormBase Model:Mass spec peptide"
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== Curator Comments/Description == | == Curator Comments/Description == | ||
+ | The Mass Spec peptide. | ||
+ | |||
+ | This is a short (less than about 100 residues, usually less than 30 residues) peptide produced by a mass-spectrometry experiment. | ||
+ | |||
+ | The name of the objects in this class is produced by prepending 'MSP:' to the actual peptide sequence itself (in uppercase). | ||
+ | For example: 'MSP:TGLINNDVVEIVQMTDDEK' | ||
+ | |||
+ | A mass-spec peptide can be produced by more than one mass-spec experiment. | ||
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== Model == | == Model == | ||
<pre> | <pre> | ||
+ | ?Mass_spec_peptide Peptide UNIQUE Text // the deduced peptide sequence | ||
+ | Protein_seq UNIQUE ?Protein // the protein object of this Mass_spec_peptide | ||
+ | Petide_is_natural // the peptide is known to occur naturally, e.g. a neuro-peptide | ||
+ | Homol Homol_homol ?Homol_data XREF MSPeptide_homol ?Method Float Int UNIQUE Int Int UNIQUE Int #Homol_info | ||
+ | Mass_spec_experiments ?Mass_spec_experiment XREF Mass_spec_peptide #Mass_spec_data | ||
+ | |||
</pre> | </pre> | ||
== Proposed Changes == | == Proposed Changes == | ||
+ | |||
+ | === unused tags === |
Latest revision as of 08:37, 17 August 2010
Curator Comments/Description
The Mass Spec peptide.
This is a short (less than about 100 residues, usually less than 30 residues) peptide produced by a mass-spectrometry experiment.
The name of the objects in this class is produced by prepending 'MSP:' to the actual peptide sequence itself (in uppercase). For example: 'MSP:TGLINNDVVEIVQMTDDEK'
A mass-spec peptide can be produced by more than one mass-spec experiment.
Model
?Mass_spec_peptide Peptide UNIQUE Text // the deduced peptide sequence Protein_seq UNIQUE ?Protein // the protein object of this Mass_spec_peptide Petide_is_natural // the peptide is known to occur naturally, e.g. a neuro-peptide Homol Homol_homol ?Homol_data XREF MSPeptide_homol ?Method Float Int UNIQUE Int Int UNIQUE Int #Homol_info Mass_spec_experiments ?Mass_spec_experiment XREF Mass_spec_peptide #Mass_spec_data