Difference between revisions of "WormBase Model:Condition"
From WormBaseWiki
Jump to navigationJump to search (Created page with '__TOC__ WormBase Models == Curator Comments/Description == == Model == <pre> </pre> == Proposed Changes ==') |
|||
| (3 intermediate revisions by 2 users not shown) | |||
| Line 11: | Line 11: | ||
== Model == | == Model == | ||
<pre> | <pre> | ||
| + | ////////////////////////////////// | ||
| + | // | ||
| + | //?Condition class | ||
| + | // | ||
| + | ////////////////////////////////// | ||
| + | |||
| + | ?Condition Life_stage ?Life_stage //life stage of the worms | ||
| + | Sex UNIQUE Hermaphrodite | ||
| + | Male | ||
| + | Female //not all worms are elegans! | ||
| + | Unknown | ||
| + | Food Text | ||
| + | Exposure_time Text | ||
| + | Strain ?Strain // added for Microarry_result [030127 krb] | ||
| + | Preparation ?Text // added for Microarray_result [030127 krb] | ||
| + | Temperature Int //temperature of the experiment | ||
| + | Genotype ?Text //record genotype when strain name is not available. | ||
| + | Other ?Text | ||
| + | Relationship Contains ?Condition XREF Contained_in //The following tags are for samples with time sequence, for example, L1 sample precedes L2 samples, but not really used. | ||
| + | Contained_in ?Condition XREF Contains | ||
| + | Precedes ?Condition XREF Follows | ||
| + | Follows ?Condition XREF Precedes | ||
| + | Reference ?Paper //Paper that defines the condition. | ||
| + | Tissue ?Anatomy_term //for samples that are not whole worm but only a tissue part. | ||
| + | Treatment ?Text //treatment of the sample. | ||
| + | SAGE_experiment ?SAGE_experiment XREF Sample //refers to SAGE experiment | ||
| + | Analysis ?Analysis XREF Sample | ||
| + | Remark ?Text #Evidence | ||
</pre> | </pre> | ||
== Proposed Changes == | == Proposed Changes == | ||
| + | |||
| + | Wen: It is strange that ?Condition XREF to SAGE experiment but not Microarray experiment. It is not consistent. | ||
| + | |||
| + | == unused tags == | ||
| + | |||
| + | Hermaphrodite | ||
| + | |||
| + | Male | ||
| + | |||
| + | Female | ||
| + | |||
| + | Exposure_time | ||
| + | |||
| + | Contains | ||
| + | |||
| + | Contained_in | ||
Latest revision as of 22:58, 6 December 2010
Curator Comments/Description
Model
//////////////////////////////////
//
//?Condition class
//
//////////////////////////////////
?Condition Life_stage ?Life_stage //life stage of the worms
Sex UNIQUE Hermaphrodite
Male
Female //not all worms are elegans!
Unknown
Food Text
Exposure_time Text
Strain ?Strain // added for Microarry_result [030127 krb]
Preparation ?Text // added for Microarray_result [030127 krb]
Temperature Int //temperature of the experiment
Genotype ?Text //record genotype when strain name is not available.
Other ?Text
Relationship Contains ?Condition XREF Contained_in //The following tags are for samples with time sequence, for example, L1 sample precedes L2 samples, but not really used.
Contained_in ?Condition XREF Contains
Precedes ?Condition XREF Follows
Follows ?Condition XREF Precedes
Reference ?Paper //Paper that defines the condition.
Tissue ?Anatomy_term //for samples that are not whole worm but only a tissue part.
Treatment ?Text //treatment of the sample.
SAGE_experiment ?SAGE_experiment XREF Sample //refers to SAGE experiment
Analysis ?Analysis XREF Sample
Remark ?Text #Evidence
Proposed Changes
Wen: It is strange that ?Condition XREF to SAGE experiment but not Microarray experiment. It is not consistent.
unused tags
Hermaphrodite
Male
Female
Exposure_time
Contains
Contained_in
