Difference between revisions of "WormBase Model:Accession number"
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== Model == | == Model == | ||
<pre> | <pre> | ||
+ | /////////////////////////////////////////////////////////////////////////////////////////////////// | ||
+ | // | ||
+ | // Accession_number | ||
+ | // | ||
+ | // Small class to track lots of different accessions which are not just EMBL/GenBank accessions. | ||
+ | // E.g. they can be: SGD ORF ids, GenBank GI numbers, protein IDs, Ensembl identifiers, swissprot | ||
+ | // accessions *and* swissprot identifiers etc. | ||
+ | // Many classes will first reference the ?Accession_number class by specifying both | ||
+ | // a database name and a database field/qualifier to help clarify, e.g. | ||
+ | // | ||
+ | // Protein "WP:CE23172" | ||
+ | // Database TREMBL TrEMBL_AC Q9N2U8 | ||
+ | // WormPep WORMPEP_ID WP:CE23172 | ||
+ | // | ||
+ | //////////////////////////////////////////////////////////////////////////////////////////////////// | ||
+ | ?Accession_number Entry Sequence ?Sequence | ||
+ | CDS ?CDS | ||
+ | Transcript ?Transcript | ||
+ | Pseudogene ?Pseudogene | ||
+ | Protein ?Protein | ||
+ | Motif ?Motif | ||
+ | Clone ?Clone // added [031120 krb] | ||
+ | Homology_group // added [031120 krb] | ||
+ | 3d_data ?3d_data | ||
+ | Structure_data ?Structure_data | ||
+ | Web_location ?Database // use for WWW display | ||
</pre> | </pre> | ||
== Proposed Changes == | == Proposed Changes == | ||
+ | === Unused tags === | ||
+ | '''Proposed for removal for WS230''' | ||
+ | |||
+ | Homology_group | ||
+ | |||
+ | 3d_data | ||
+ | |||
+ | Web_location |
Latest revision as of 10:05, 15 November 2011
Curator Comments/Description
Model
/////////////////////////////////////////////////////////////////////////////////////////////////// // // Accession_number // // Small class to track lots of different accessions which are not just EMBL/GenBank accessions. // E.g. they can be: SGD ORF ids, GenBank GI numbers, protein IDs, Ensembl identifiers, swissprot // accessions *and* swissprot identifiers etc. // Many classes will first reference the ?Accession_number class by specifying both // a database name and a database field/qualifier to help clarify, e.g. // // Protein "WP:CE23172" // Database TREMBL TrEMBL_AC Q9N2U8 // WormPep WORMPEP_ID WP:CE23172 // //////////////////////////////////////////////////////////////////////////////////////////////////// ?Accession_number Entry Sequence ?Sequence CDS ?CDS Transcript ?Transcript Pseudogene ?Pseudogene Protein ?Protein Motif ?Motif Clone ?Clone // added [031120 krb] Homology_group // added [031120 krb] 3d_data ?3d_data Structure_data ?Structure_data Web_location ?Database // use for WWW display
Proposed Changes
Unused tags
Proposed for removal for WS230
Homology_group
3d_data
Web_location