Difference between revisions of "Website:Visualization with ggplot2 of the R-Project"
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Jump to navigationJump to search (Updated how to start Rserve on dev/staging.) |
(Starting R-serve on dev/staging.) |
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Applicable to <code>dev.wormbase.org</code> and <code>staging.wormbase.org</code> (same machine). | Applicable to <code>dev.wormbase.org</code> and <code>staging.wormbase.org</code> (same machine). | ||
+ | |||
+ | <pre> | ||
+ | sudo /etc/init.d/rserve-startup | ||
+ | </pre> | ||
+ | |||
+ | This is a wrapper for: | ||
<pre> | <pre> | ||
sudo -u jenkins R_HOME=/usr/lib/R /usr/lib/R/bin/Rserve --no-save | sudo -u jenkins R_HOME=/usr/lib/R /usr/lib/R/bin/Rserve --no-save | ||
</pre> | </pre> |
Revision as of 23:09, 11 December 2013
Installation Instructions
# Installation instructions based on Debian 7.1. # Installs R. Version 2.14 or newer required. sudo apt-get install r-base # Installs Ruby and Ruby gems. Version 1.9 or newer required. sudo apt-get install ruby ruby-dev rubygems # ggplot2: plotting of many different scientific graphs using a # single unified interface. Drawback: the instructions here # require user input. sudo R # ...then type # install.packages("ggplot2") # ...and exit R after the installation has completed. # Defaults: lets you tinker with R default settings. wget http://cran.r-project.org/src/contrib/Defaults_1.1-1.tar.gz sudo R CMD INSTALL Defaults_1.1-1.tar.gz # Rserve: R server that can be accessed via Ruby, Python, but not Perl. wget http://www.rforge.net/Rserve/snapshot/Rserve_1.8-0.tar.gz sudo R CMD INSTALL Rserve_1.8-0.tar.gz # Install Ruby gem that provides programmatic access to Rserve. sudo gem install rserve-client # Install Perl IPC::Run3 module, which is used to call the wrapper "script/rserve_client.rb". sudo cpan install IPC::Run3
Starting the Rserve Daemon
Applicable to dev.wormbase.org
and staging.wormbase.org
(same machine).
sudo /etc/init.d/rserve-startup
This is a wrapper for:
sudo -u jenkins R_HOME=/usr/lib/R /usr/lib/R/bin/Rserve --no-save