Difference between revisions of "WebDev 2010.05.12-Agenda and Minutes"
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== 2. WS214 Update status == | == 2. WS214 Update status == | ||
− | * protein motifs - break-up load_gff_patches steps | + | * protein motifs -- break-up load_gff_patches steps |
− | * mGENE entries - checked out, OK | + | * mGENE entries -- checked out, OK |
− | * build pipeline status - to continues after WS214 completion | + | * build pipeline status -- to continues after WS214 completion |
* GFF files -- add to check matrix | * GFF files -- add to check matrix | ||
+ | |||
+ | == 2.1 modENCODE == | ||
+ | |||
+ | * XS working on this | ||
+ | * Use main GBrowse install | ||
== 3. Discuss BioMart timeline == | == 3. Discuss BioMart timeline == | ||
+ | |||
+ | * AC ported functionality to Biomart server | ||
+ | * Dealing with boiler-plate issues | ||
+ | * Will build WS210 soon | ||
== 4. Meetings == | == 4. Meetings == | ||
− | == 5. | + | * Madison? |
− | DB connectivity: | + | |
+ | == 5. API progress (all) == | ||
+ | |||
+ | * DB connectivity: eg. CPU Usage: u129.24 s73.32 cu186.39 cs0 - .475% CPU load | ||
+ | * Every one moving along | ||
+ | * AC Started Search object | ||
+ | |||
+ | == 6. Others == | ||
+ | |||
+ | * Discussed ontology search upgrade with Phenotype curators (Gary S. Jo wasn't there). | ||
+ | * They will evaluate results and are working on suggestions for the search form. | ||
+ | * Plans to add annotation searches for GO and AO, then bring in input from Raymond, Ranjana, Kimberly |
Latest revision as of 16:37, 12 May 2010
Contents
Agenda
1. Review last week's progress
1.1 GBrowse
- Abby's insights re: issues, correct
- XS made adjustments
- EST aligner issue discussion
2. WS214 Update status
- protein motifs -- break-up load_gff_patches steps
- mGENE entries -- checked out, OK
- build pipeline status -- to continues after WS214 completion
- GFF files -- add to check matrix
2.1 modENCODE
- XS working on this
- Use main GBrowse install
3. Discuss BioMart timeline
- AC ported functionality to Biomart server
- Dealing with boiler-plate issues
- Will build WS210 soon
4. Meetings
- Madison?
5. API progress (all)
- DB connectivity: eg. CPU Usage: u129.24 s73.32 cu186.39 cs0 - .475% CPU load
- Every one moving along
- AC Started Search object
6. Others
- Discussed ontology search upgrade with Phenotype curators (Gary S. Jo wasn't there).
- They will evaluate results and are working on suggestions for the search form.
- Plans to add annotation searches for GO and AO, then bring in input from Raymond, Ranjana, Kimberly