WebDev 2010.04.28-Agenda and Minutes

Agenda

1. Administration Update (Todd; 10 minutes)

• Debugging production envt.
• Mirroring -- Caltech
• Fixed ftp site software

2. Discuss BioMart issues and timeline (all; 10 minutes)

• AC working with help desk to streamline mart set-up.
• TH to help with machine

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TH notes:

• Abby looking to clone Zheng's VM to wb-biomart.oicr.on.ca
• wb-blast.oicr.on.ca to become blast/aceserver. TH to look into.

3. Discuss Genome Browser 2 issues (all; 10 minutes)

Sequence dumper streamline

• fixed, works on dev.

gbrowse_img problem: created too many files under /tmperdata/c_elegans/

• XS fixed and change is out.

Other notes:

• Track rendering works fine
• Nucleosome coverage

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TH: made temp file cron job (gbrowse-support-files/purge_temporary_files.sh) more aggressive

TH: Will check with Sanger on nucleosome data

4. Discuss modENCODE migration status (Xq, all; 10 minutes)

finished moving Henikoff, Lieb, Piano and Snyder data; is currently loading Waterston data(hillier integrated transcripts)

 http://wb-www1.oicr.on.ca:8080/db/gb2/gbrowse/c_elegans/?name=IV%3A120%2C000..130%2C000

edit wiki on how to install samtools and Bio-BigFile package

http://www.wormbase.org/wiki/index.php/GBrowse_Administration#Install_Bio-BigFile

Will continue updating the modencode migration wiki Abby initiated

 http://www.wormbase.org/wiki/index.php/Brute_force_-_modencode_migration

5. WS214 status (Norie; 5 minutes)

• On going, started 04/27/2010
• need to nix some old files

6. Outstanding Help Desk Issues (all; 10 minutes)

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