WebDev 2010.04.07-Agenda and Minutes
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Revision as of 16:41, 7 April 2010 by Norie (talk | contribs) (→5. modENCODE data migration status (Abby, Xq; 10 minutes))
Contents
- 1 Agenda
- 1.1 1. Administrative Update (Todd; 5 minutes)
- 1.2 2. GB2 production discussion (Todd; 5 minutes)
- 1.3 3. Discuss WS213 update progress (Norie; 5 minutes)
- 1.4 4. Discuss WormMart status (all; 10 minutes)
- 1.5 5. modENCODE data migration status (Abby, Xq; 10 minutes)
- 1.6 6. Revisit April Milestone progress (all; 10 minutes)
Agenda
1. Administrative Update (Todd; 5 minutes)
- WS212 is in production
- Some fixes will be out with WS213
2. GB2 production discussion (Todd; 5 minutes)
- Small server farm running now
- Performance seems pretty good, LS noted some quirks with zombie processes (These do not come up in modENCODE), suggested possible error in fastCGI implementation.
- XS added some improvements
- config files discussed
3. Discuss WS213 update progress (Norie; 5 minutes)
- build ongoing -- GFF files in
- builds of late have been slowed by acedb slowdowns
- experimentation with MySQL compression (TH)
4. Discuss WormMart status (all; 10 minutes)
Current Server & Builds
new server
- Fixed CSHL server (TH); some problem with WS200 db
new builds
- AC trouble shooting
- Working on WS205
- Will test WS200
- Question about skipping problematic genes?
5. modENCODE data migration status (Abby, Xq; 10 minutes)
dev: (Henikoff) http://dev.wormbase.org/gb2/gbrowse/c_elegans/
production: (Henikoff & Lieb - still working on this) http://wormbase.org/db/gb2/gbrowse/c_elegans/
documentation: http://www.wormbase.org/wiki/index.php/Brute_force_-_modencode_migration
- AC -- Henikoff, working pretty well; running into caching issues with the other two.
- LS -- Wig to Bigwig file development
6. Revisit April Milestone progress (all; 10 minutes)
Proposed Milestones
Expand database connectivity and make it more robust (Xq)
- Failover
- Additional GFF DB support
Finish and polish the prototype page report (all)
- basic/advanced search interface
- multiple hits display
- no hits display
- asynchronous interface prototype. Tabs? Accordion? Selectable?
- search for page that isn't there (LS)
- page suggestions (LS)
- XML (LS)
- Javascript Lib?
- CSS development
API for Sequence, Protein, Clone, Variation, Strain (overseen by Norie with help from all)
- draw from Gene.pm experience.
- perform analysis on needed assistance -- will list.
Public demo site (Todd)
- Backups
- Nightly builds
Widget/Page level caching (Todd)
To consider:
- maintenance interface
- debugging / logging
- performance metrics
- caching / cloud layer